View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-16 (Length: 135)
Name: Solexa-NF5844-16
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 58; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 4512531 - 4512592
Alignment:
| Q |
74 |
ctggacgaagtgagcaagaacatttggttggtggactcaaaggtagtaaataatccaactta |
135 |
Q |
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| T |
4512531 |
ctggatgaagtgagcaagaacatttggttggtggactcaaaggtagtaaataatccaactta |
4512592 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 43432781 - 43432740
Alignment:
| Q |
75 |
tggacgaagtgagcaagaacatttggttggtggactcaaagg |
116 |
Q |
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| T |
43432781 |
tggatgaagtgcgcaagaatatttggttggtggactcaaagg |
43432740 |
T |
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