View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-19 (Length: 127)
Name: Solexa-NF5844-19
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 49807707 - 49807831
Alignment:
| Q |
3 |
caacacccgcaacgaagaaggtcattatcaagagtgccgatatgctccctgacatgcaaaaggaagccgttgatatcgctgtcgttgttagtctctctta |
102 |
Q |
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| T |
49807707 |
caacacccgcaacgaagaaggtcattatcaagagtgccgatatgctccctgacatgcaaaaggaagccgttgatatcgctgtcgttgttagtctctctta |
49807806 |
T |
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| Q |
103 |
ctctgtaacattcactccttcttct |
127 |
Q |
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| T |
49807807 |
ctcttcaacattcactccttcttct |
49807831 |
T |
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