View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-23 (Length: 127)
Name: Solexa-NF5844-23
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-23 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 32805697 - 32805816
Alignment:
| Q |
8 |
atatcgtggatgaaagtgtggctgtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcacaggaaccaactgg |
107 |
Q |
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| T |
32805697 |
atatcgtggatgaaagtgtggctgtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcacaggaaccaactgg |
32805796 |
T |
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| Q |
108 |
tttttaaccaatctgtgttt |
127 |
Q |
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| T |
32805797 |
tttttaaccaatctgtgttt |
32805816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 6095220 - 6095101
Alignment:
| Q |
8 |
atatcgtggatgaaagtgtggctgtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcacaggaaccaactgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
6095220 |
atatcgtggatgaaagtgtggctgtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcataggaaccaactag |
6095121 |
T |
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| Q |
108 |
tttttaaccaatctgtgttt |
127 |
Q |
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|||||||||||||||||||| |
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| T |
6095120 |
tttttaaccaatctgtgttt |
6095101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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