View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-25 (Length: 121)
Name: Solexa-NF5844-25
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-25 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 52208681 - 52208788
Alignment:
| Q |
14 |
atatataataaatcttgtaaccatgttgttgaggaccaggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctcaactgttcatct |
113 |
Q |
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| T |
52208681 |
atatataataaatattgtaagcatgttgttgaggaccaggttttgctgctgtaataacaacacgcaattttacacaattttcgatctcaactgttcatct |
52208780 |
T |
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| Q |
114 |
cagatcga |
121 |
Q |
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|||||||| |
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| T |
52208781 |
cagatcga |
52208788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 29054257 - 29054304
Alignment:
| Q |
47 |
gaccaggttttgctgctgtaataacaacacgcaatttcacacaatttt |
94 |
Q |
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| T |
29054257 |
gaccaggttttgctgttgtaaaaacagcacgcagtttcacacagtttt |
29054304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 15069670 - 15069599
Alignment:
| Q |
50 |
caggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctcaactgttcatctcagatcga |
121 |
Q |
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| T |
15069670 |
caggttttgctgctgtaataacaacacgcaatttcacgtagttttcgatctcagccgttcatctcagatcga |
15069599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 1759673 - 1759634
Alignment:
| Q |
45 |
aggaccaggttttgctgctgtaataacaacacgcaatttc |
84 |
Q |
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| T |
1759673 |
aggaccaggttttgctgctgtaataacatcacgcagtttc |
1759634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 7e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 26598198 - 26598273
Alignment:
| Q |
46 |
ggaccaggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctcaactgttcatctcagatcga |
121 |
Q |
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| T |
26598198 |
ggaccaggttttgctgctgtaaaaacagcacgcaatttcacgcagtttttgatctcagccgttcatctcagatcga |
26598273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 24246416 - 24246483
Alignment:
| Q |
46 |
ggaccaggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctcaactgttcatct |
113 |
Q |
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| T |
24246416 |
ggaccaggttttgctgttgtaaaaataacatgcaatttcacgcagttttagatctcagctgttcatct |
24246483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 9252268 - 9252325
Alignment:
| Q |
45 |
aggaccaggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctca |
102 |
Q |
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| T |
9252268 |
aggaccaggttttgctgctgtaaaaacaccatgcagtttcacgcagtttttgatctca |
9252325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 10671112 - 10671184
Alignment:
| Q |
46 |
ggaccaggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctcaactgttcatctcagat |
118 |
Q |
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| T |
10671112 |
ggacgaggttttgatgttgtaataacaacacgcagtttcacacagttttcgatcttaacagttcatttcagat |
10671184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 5743748 - 5743680
Alignment:
| Q |
50 |
caggttttgctgctgtaataacaacacgcaatttcacacaattttcgatctcaactgttcatctcagat |
118 |
Q |
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|||||||||||||| ||| ||||||||||| ||| ||| |||||| |||||| | |||||||| |||| |
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| T |
5743748 |
caggttttgctgctttaaaaacaacacgcagttttacataattttttatctcagccgttcatcttagat |
5743680 |
T |
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