View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5844-27 (Length: 115)

Name: Solexa-NF5844-27
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5844-27
Solexa-NF5844-27
[»] chr5 (11 HSPs)
chr5 (41-115)||(37391981-37392055)
chr5 (41-115)||(37399832-37399906)
chr5 (41-115)||(37436773-37436847)
chr5 (41-115)||(37534166-37534240)
chr5 (41-115)||(37712690-37712764)
chr5 (41-115)||(37429811-37429885)
chr5 (41-115)||(37595390-37595464)
chr5 (41-115)||(37640938-37641012)
chr5 (41-96)||(37703753-37703808)
chr5 (41-111)||(37697857-37697927)
chr5 (41-111)||(37824965-37825035)
[»] chr3 (1 HSPs)
chr3 (41-115)||(14554104-14554178)
[»] chr4 (2 HSPs)
chr4 (41-115)||(24216766-24216840)
chr4 (41-115)||(16841896-16841970)


Alignment Details
Target: chr5 (Bit Score: 51; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 37391981 - 37392055
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||| || |||||||||||||||    
T  37391981 attcataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttg 37392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 37399832 - 37399906
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||  ||||| ||||||||  |||||||||||||||||    
T  37399832 attcataatgctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttg 37399906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 37436847 - 37436773
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| |||||||||||||||||||||||||||| || || ||||||| |||||||||||  ||||||||||||||    
T  37436847 attcataatgctactaatttaagggagcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttg 37436773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 37534240 - 37534166
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||    
T  37534240 attcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttg 37534166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 37712764 - 37712690
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||    
T  37712764 attcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttg 37712690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 37429885 - 37429811
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||  ||| |||| |||| |||||||||||| ||||||    
T  37429885 attcttaatgctactaatttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttg 37429811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 37595464 - 37595390
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||| || |  ||||||||||||    
T  37595464 attcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttg 37595390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 37641012 - 37640938
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||| || |  ||||||||||||    
T  37641012 attcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttg 37640938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 37703808 - 37703753
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttc 96  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  37703808 attcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttc 37703753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 37697927 - 37697857
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctc 111  Q
    |||| ||||||||||||||||||||| |||||| |  || ||||||| |||||||||||| ||||||||||    
T  37697927 attcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctc 37697857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 37825035 - 37824965
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctc 111  Q
    |||| ||||||||||||||||||||| |||||| |  || ||||||| |||||||||||| ||||||||||    
T  37825035 attcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctc 37824965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 14554178 - 14554104
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||| ||| || || || ||||||| |||||||| ||||||||||||||||||    
T  14554178 attcataatgctactaatttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttg 14554104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 24216766 - 24216840
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| ||||||||||||||||||||||||| |  || || ||||| | || ||||||||||||||||||||||||    
T  24216766 attcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttg 24216840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 16841896 - 16841970
Alignment:
Q  41 attcgtaatgctactaatttaagggagcttcatttggatagagtgaatatgtcttcaatcagagagagctctttg 115  Q
    |||| |||||||||||| |||||||| ||| || |  || ||||||| |||||||||||  ||||||||||||||    
T  16841896 attcataatgctactaaattaagggatctttatctaaatggagtgaacatgtcttcaattggagagagctctttg 16841970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University