View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-4 (Length: 156)
Name: Solexa-NF5844-4
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 6e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 41830009 - 41830164
Alignment:
| Q |
1 |
agagagacaagtgagcacaaagccacgcgttaggcaattttgtaggccaaataataataa----taattaagcacacatagtacactttttcaaataatg |
96 |
Q |
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| T |
41830009 |
agagagacaactgagcacaaagccacgcgttaggcaattttgtaggccaaataataataataattaattaagcacacatagtacactttttcaaataatg |
41830108 |
T |
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| Q |
97 |
gaaaattgattctcctaactaagttctctctattggcgtgcgtggctaagctcacgccat |
156 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41830109 |
gaaaattgattctc----ctaagttctctctattggcgtgcgtggctaagctcacgccat |
41830164 |
T |
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