View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-9 (Length: 144)
Name: Solexa-NF5844-9
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 53179853 - 53179989
Alignment:
| Q |
8 |
ggggcatgttacttagttcttgttccaccataatctgggaacttggaagagacaaagtccctttctagccaactacttattcaaacatgcgcgtgtggtc |
107 |
Q |
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| T |
53179853 |
ggggcatgttacttagttcttgttccaccataatctgggaacttggaagagacaaagtccctttctagccaactacttattcaaacatgcgtgtgtggtc |
53179952 |
T |
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| Q |
108 |
acctttagccattaaagttgcccagctaagaccacaa |
144 |
Q |
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| T |
53179953 |
acctttaggcattaaagttgcccagctaagaccacaa |
53179989 |
T |
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