View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-1 (Length: 347)
Name: Solexa-NF5845-1
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-1 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 45389786 - 45389977
Alignment:
| Q |
26 |
gtacaatctttgatgtttctcaaatttgcaatttcacatgacgctgcaagcatttgggttctcatcactgaacatttgtggcgccggcggcggtggtgga |
125 |
Q |
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| T |
45389786 |
gtacaacctttgatgtttctcaaatttgcaatttcacatgacgctgcaagcatttgggttctcatcactgaacatttgtggcgccggcggcggtggtgga |
45389885 |
T |
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| Q |
126 |
gggtatgcttgatagtaagcagctgggtatgcaggatatccaatttctgggtatgcatacaaattcatggatggattatagtagtattgata |
217 |
Q |
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| T |
45389886 |
gggtatgcttgatagtaagcagctgggtatgcaggatatccaatttctgggtatgcatacaaattcatggatggattatagtagtattgata |
45389977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 45385772 - 45385820
Alignment:
| Q |
58 |
ttcacatgacgctgcaagcatttgggttctcatcactgaacatttgtgg |
106 |
Q |
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| T |
45385772 |
ttcacatgacacagcaagcatttgggttctcatcactgaacatttgtgg |
45385820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 31559343 - 31559288
Alignment:
| Q |
162 |
tatccaatttctgggtatgcatacaaattcatggatggattatagtagtattgata |
217 |
Q |
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| T |
31559343 |
tatccaatttctgggtatgcatataaatccatggatggattataggagtattgata |
31559288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 41610845 - 41610796
Alignment:
| Q |
168 |
atttctgggtatgcatacaaattcatggatggattatagtagtattgata |
217 |
Q |
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| T |
41610845 |
atttctgggtatgcatataaattcatggatgaattatagtagttttgata |
41610796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 21269839 - 21269792
Alignment:
| Q |
59 |
tcacatgacgctgcaagcatttgggttctcatcactgaacatttgtgg |
106 |
Q |
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| T |
21269839 |
tcacatgacaatgcaagcatttggattctcatcactaaacatttgtgg |
21269792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 15632818 - 15632771
Alignment:
| Q |
162 |
tatccaatttctgggtatgcatacaaattcatggatggattatagtag |
209 |
Q |
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||||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
15632818 |
tatccaatttctgggtaggcatataaatccatggatggattatagtag |
15632771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 36255465 - 36255512
Alignment:
| Q |
168 |
atttctgggtatgcatacaaattcatggatggattatagtagtattgata |
217 |
Q |
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| T |
36255465 |
atttctgggtatgtata--aattcatggatggattatagtagtattgata |
36255512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 15601520 - 15601473
Alignment:
| Q |
162 |
tatccaatttctgggtatgcatacaaattcatggatggattatagtag |
209 |
Q |
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|||| |||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
15601520 |
tatctaatttctgggtaggcatataaatccatggatggattatagtag |
15601473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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