View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-10 (Length: 140)
Name: Solexa-NF5845-10
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-10 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 35297810 - 35297674
Alignment:
| Q |
1 |
agagattcgaaaaaagatgggaagatctaattnnnnnnntggaaatgctgaacctagtgagataaatcatatcccgattacatctcgaattaacatgatt |
100 |
Q |
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| T |
35297810 |
agagattcgaaaaaagatgggaagatctaattaaaaaaatggaaatgctgaacctagtgagataaatcat--cccgattacatctcgaattaacatgatt |
35297713 |
T |
|
| Q |
101 |
agctatttaacatttctgatcctaataaattgggggttt |
139 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
35297712 |
agctatttaacacttctgatcctaataaattgggggttt |
35297674 |
T |
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