View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5845-11 (Length: 140)

Name: Solexa-NF5845-11
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5845-11
Solexa-NF5845-11
[»] chr2 (14 HSPs)
chr2 (1-140)||(39214937-39215076)
chr2 (3-140)||(39602005-39602142)
chr2 (2-131)||(39488120-39488249)
chr2 (1-61)||(39458221-39458281)
chr2 (3-91)||(39199452-39199540)
chr2 (1-140)||(39474198-39474337)
chr2 (1-55)||(39129495-39129549)
chr2 (1-91)||(39382183-39382273)
chr2 (1-91)||(39450511-39450601)
chr2 (2-61)||(39136294-39136353)
chr2 (1-62)||(39399012-39399073)
chr2 (3-51)||(27154993-27155041)
chr2 (1-53)||(39391674-39391726)
chr2 (5-61)||(39422489-39422545)
[»] chr7 (1 HSPs)
chr7 (2-61)||(19806655-19806714)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 1e-66; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39214937 - 39215076
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattgacgaggctca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39214937 agagattgcagtccataaagagatatgttgaggagtgctgtaaagagcttgaaaataagaagacacaggtcagttgtgttagaagaattgacgaggctca 39215036  T
Q  101 tgagaaaatgcaaggaaaaattgaagaatgtattaaggat 140  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39215037 tgagaaaatgcagggaaaaattgaagaatgtattaaggat 39215076  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 39602005 - 39602142
Alignment:
Q  3 agattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattgacgaggctcatg 102  Q
    ||||||||||||||||||| | || || | |||||| | |||||||||||||| ||||| |   |  | |||||| ||||| |||||  ||| |||||||    
T  39602005 agattgcagtccataaagatagatattcaggagtgccgcaaagagcttgaaaataagaaaaaggaaattagttgttttagaggaattttcgaagctcatg 39602104  T
Q  103 agaaaatgcaaggaaaaattgaagaatgtattaaggat 140  Q
    |||||||||| |||||||||||||||||||||||||||    
T  39602105 agaaaatgcagggaaaaattgaagaatgtattaaggat 39602142  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 39488249 - 39488120
Alignment:
Q  2 gagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattgacgaggctcat 101  Q
    |||| ||||||| ||||||||| ||||||| ||||||| ||||||||||||||| ||||| |   |  | ||||||||| |||||||| |||| | |||     
T  39488249 gagactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgttggaagaattaacgaagttcac 39488150  T
Q  102 gagaaaatgcaaggaaaaattgaagaatgt 131  Q
     |||||||||| || |||||||||||||||    
T  39488149 tagaaaatgcaggggaaaattgaagaatgt 39488120  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39458221 - 39458281
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaa 61  Q
    ||||||||||||||||||||||| || |||| |||||||| ||||| ||||||||||||||    
T  39458221 agagattgcagtccataaagagagatattgaggagtgctgcaaagatcttgaaaacaagaa 39458281  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 39199540 - 39199452
Alignment:
Q  3 agattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattga 91  Q
    ||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||| |||||||  || || |||  |||||||||||||||    
T  39199540 agattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagtgttgttagaagaattga 39199452  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 39474337 - 39474198
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattgacgaggctca 100  Q
    |||||||||| |||||||||||| || |||| |||||||   ||||||||||||| ||||| |   |  | |||  |||| |||||||  |||| |||||    
T  39474337 agagattgcattccataaagagagatattgaggagtgctccgaagagcttgaaaataagaaaaagaaaattagtcatgttggaagaatgaacgaagctca 39474238  T
Q  101 tgagaaaatgcaaggaaaaattgaagaatgtattaaggat 140  Q
      |||||||||| |||||||||||||||||| | ||||||    
T  39474237 caagaaaatgcagggaaaaattgaagaatgtgtcaaggat 39474198  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39129495 - 39129549
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaa 55  Q
    ||||||||||||||||||||||| || |||| |||||||  ||||||||||||||    
T  39129495 agagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaa 39129549  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39382273 - 39382183
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattga 91  Q
    ||||||| ||||||||||||||| ||  ||| |||||||| ||||||||| |||| |||||||  || || |||  |||||||||||||||    
T  39382273 agagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagtgttgttagaagaattga 39382183  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 39450511 - 39450601
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaagacacaggtcagttgtgttagaagaattga 91  Q
    |||||||||||||||| |||| | || |||| || ||||| ||||||||| |||| ||||| |  || || ||||||||||||||||||||    
T  39450511 agagattgcagtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaagcaagttagttgtgttagaagaattga 39450601  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 39136294 - 39136353
Alignment:
Q  2 gagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaa 61  Q
    |||||||||||||||||||||| || |||| ||||||||  |||| |||||||| |||||    
T  39136294 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 39136353  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39399073 - 39399012
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaag 62  Q
    ||||||||||||||||||||||| || |||| || ||||| ||||| |||| ||| ||||||    
T  39399073 agagattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaag 39399012  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 27155041 - 27154993
Alignment:
Q  3 agattgcagtccataaagagatatgttgatgagtgctgtaaagagcttg 51  Q
    ||||||||||||||||||||| || |||| |||||||  ||||||||||    
T  27155041 agattgcagtccataaagagagatattgaggagtgctccaaagagcttg 27154993  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39391726 - 39391674
Alignment:
Q  1 agagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaa 53  Q
    ||||||||| ||||||||||| | || |||| |||||||| ||||||||||||    
T  39391726 agagattgctgtccataaagaaagatattgaagagtgctgcaaagagcttgaa 39391674  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 39422545 - 39422489
Alignment:
Q  5 attgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaa 61  Q
    ||||||||||||||||||| || ||||  ||||||| |||||||| ||||| |||||    
T  39422545 attgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaataagaa 39422489  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 19806655 - 19806714
Alignment:
Q  2 gagattgcagtccataaagagatatgttgatgagtgctgtaaagagcttgaaaacaagaa 61  Q
    |||||||||||||||||||||| || |||| || |||||  |||| |||||||| |||||    
T  19806655 gagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataagaa 19806714  T

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