View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5845-12 (Length: 140)

Name: Solexa-NF5845-12
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5845-12
Solexa-NF5845-12
[»] chr3 (11 HSPs)
chr3 (1-139)||(32551905-32552043)
chr3 (2-126)||(35540585-35540709)
chr3 (17-126)||(1292120-1292228)
chr3 (17-126)||(19610904-19611013)
chr3 (49-127)||(55222155-55222232)
chr3 (18-82)||(1152048-1152112)
chr3 (49-124)||(3935999-3936073)
chr3 (46-124)||(1560025-1560103)
chr3 (32-126)||(33428592-33428686)
chr3 (49-126)||(28131096-28131173)
chr3 (34-110)||(24833756-24833832)
[»] chr2 (5 HSPs)
chr2 (17-126)||(37847202-37847311)
chr2 (17-128)||(2969289-2969400)
chr2 (52-101)||(39446128-39446177)
chr2 (33-126)||(28967824-28967916)
chr2 (52-125)||(21848702-21848775)
[»] scaffold0086 (1 HSPs)
scaffold0086 (31-126)||(33669-33764)
[»] chr4 (9 HSPs)
chr4 (18-124)||(38067610-38067715)
chr4 (17-126)||(51175282-51175391)
chr4 (51-125)||(45832345-45832419)
chr4 (49-126)||(44992021-44992097)
chr4 (49-126)||(31768041-31768118)
chr4 (49-110)||(40445542-40445603)
chr4 (17-101)||(19850011-19850094)
chr4 (38-102)||(32409315-32409379)
chr4 (51-126)||(12191281-12191355)
[»] chr8 (6 HSPs)
chr8 (17-126)||(29637973-29638082)
chr8 (49-126)||(5423313-5423390)
chr8 (52-126)||(12796418-12796492)
chr8 (49-126)||(41437972-41438048)
chr8 (47-126)||(1581286-1581365)
chr8 (17-84)||(41439202-41439269)
[»] chr1 (11 HSPs)
chr1 (49-123)||(47677146-47677220)
chr1 (18-126)||(13004308-13004416)
chr1 (37-126)||(45370717-45370806)
chr1 (51-126)||(12705454-12705529)
chr1 (49-126)||(30627394-30627470)
chr1 (49-117)||(35719093-35719161)
chr1 (49-110)||(45468237-45468298)
chr1 (31-126)||(1834754-1834849)
chr1 (53-124)||(27163297-27163367)
chr1 (49-126)||(5939625-5939702)
chr1 (52-102)||(52898293-52898341)
[»] chr7 (7 HSPs)
chr7 (17-126)||(583826-583935)
chr7 (17-126)||(48293821-48293930)
chr7 (49-126)||(8488980-8489058)
chr7 (49-125)||(38975289-38975364)
chr7 (49-126)||(8515789-8515867)
chr7 (52-108)||(17503457-17503513)
chr7 (52-108)||(17549701-17549757)
[»] chr6 (3 HSPs)
chr6 (49-126)||(6811286-6811363)
chr6 (49-126)||(17096582-17096659)
chr6 (49-126)||(27753320-27753396)
[»] chr5 (5 HSPs)
chr5 (31-110)||(15958954-15959033)
chr5 (6-81)||(2552637-2552712)
chr5 (77-126)||(2552227-2552276)
chr5 (52-108)||(4740506-4740562)
chr5 (16-71)||(30352238-30352293)
[»] scaffold0007 (1 HSPs)
scaffold0007 (32-126)||(175155-175248)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 8e-59; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32552043 - 32551905
Alignment:
Q  1 ataggggagagaaaacccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgtta 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||    
T  32552043 ataggggagagaaaacccttatacaattacccgttttttaatggagattcattttttcttcctccaatggagggtccttaacagagagtggtccttgtta 32551944  T
Q  101 agcaaggacctcccattgaagatgctatatgataaatta 139  Q
    || ||||||||||||||||| ||||||||||||||||||    
T  32551943 agtaaggacctcccattgaatatgctatatgataaatta 32551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 35540585 - 35540709
Alignment:
Q  2 taggggagagaaaacccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaa 101  Q
    |||| ||||||||| ||||||| | ||||  ||| ||||||   || ||||||||||||||||||||||| | | ||||||| |||| | ||||||||||    
T  35540585 taggagagagaaaatccttatatagttacatgttacttaatattgactcattttttcttcctccaatggaggatacttaacagagagtgatccttgttaa 35540684  T
Q  102 gcaaggacctcccattgaagatgct 126  Q
      |||||||||||||||||||||||    
T  35540685 ataaggacctcccattgaagatgct 35540709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 1292120 - 1292228
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| | ||||| ||||||||||||| | ||||||||||||| ||||||||  ||||||||| |||||| | || |||||||| ||||| || ||||    
T  1292120 ccttatatagttacctgtttcttaatggatactcattttttcttcttccaatgg-gggtccttaataaagagtgatctttgttaagtaaggatcttccat 1292218  T
Q  117 tgaagatgct 126  Q
    ||||||||||    
T  1292219 tgaagatgct 1292228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 19611013 - 19610904
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| | ||||||||| ||||| || || ||||||||||||||||||||||| ||||||||||  | ||  |||||||||||  ||||||| |||||    
T  19611013 ccttatatagttacccgttccttaacggggactcattttttcttcctccaatggagggtccttaacggaaagtagtccttgttaaataaggaccccccat 19610914  T
Q  117 tgaagatgct 126  Q
    || |||||||    
T  19610913 tggagatgct 19610904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 55222232 - 55222155
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgcta 127  Q
    ||||||||||||||||||||| | |||||||||||  ||| |||||||||||||||| |||| ||||||| ||||||||    
T  55222232 tcattttttcttcctccaatgaagggtccttaacatggagtggtccttgttaagcaaagacc-cccattggagatgcta 55222155  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 1152048 - 1152112
Alignment:
Q  18 cttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaac 82  Q
    |||||| |||||| ||||||||||||  || ||||||||||||||||||||||| ||||||||||    
T  1152048 cttatataattactcgtttcttaatgaggactcattttttcttcctccaatggagggtccttaac 1152112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 3935999 - 3936073
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatg 124  Q
    ||||||||||||| ||||||||| ||||||||||  |||| ||||||||||||| ||||||| ||||||| |||||    
T  3935999 tcattttttcttcttccaatggagggtccttaacggagagcggtccttgttaagtaaggacc-cccattggagatg 3936073  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 1560025 - 1560103
Alignment:
Q  46 gattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatg 124  Q
    |||||||||||||||||||||||||   ||||||||| | ||| |||| |||||||| |||||||| |||||| |||||    
T  1560025 gattcattttttcttcctccaatggggagtccttaacgaggagtggtctttgttaagtaaggaccttccattggagatg 1560103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 33428686 - 33428592
Alignment:
Q  32 cgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    |||| ||||| || || ||||| | |||||||||||||| |||||||||||   ||| | |||||||| || ||||||||||||||| |||||||    
T  33428686 cgttacttaacggggactcattatctcttcctccaatgggaggtccttaacggggagtgatccttgttcagtaaggacctcccattggagatgct 33428592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 28131173 - 28131096
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||||||||||  |||| |||| |  ||| | ||||||||||| ||| ||||||||||| |||||||    
T  28131173 tcattttttcttcctccaatggggggtctttaatagggagtgatccttgttaagtaagaacctcccattggagatgct 28131096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 24833756 - 24833832
Alignment:
Q  34 tttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacc 110  Q
    |||||||| || || ||||||||||||||||||||  | |||||||||| ||||| |  |||||||||| |||||||    
T  24833756 tttcttaacggggactcattttttcttcctccaataaagggtccttaacgaagagtgacccttgttaagtaaggacc 24833832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 37847311 - 37847202
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| | ||||||||| ||||||||  | |||||||||||||||||||||| |||| ||||||   ||| ||||||||||||| |||||||||||||    
T  37847311 ccttatatagttacccgttccttaatgggaactcattttttcttcctccaatgggaggttcttaacggggagtggtccttgttaagtaaggacctcccat 37847212  T
Q  117 tgaagatgct 126  Q
    || |||||||    
T  37847211 tggagatgct 37847202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 2969289 - 2969400
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| ||||||  ||| ||| |||| || ||||||| ||||||||||||||| | |||||||||| ||| ||||||||||||  || || |||||||    
T  2969289 ccttatataattacatgttccttgatggggactcattttctcttcctccaatggaggatccttaacaatgagcggtccttgttaattaatgagctcccat 2969388  T
Q  117 tgaagatgctat 128  Q
    || |||||||||    
T  2969389 tggagatgctat 2969400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 39446177 - 39446128
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaa 101  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  39446177 ttttttcttcctccaatgggaggtccttaacaaggagtggtccttgttaa 39446128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 28967824 - 28967916
Alignment:
Q  33 gtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||| || || |||||||||||||||| ||| || ||||||||||    || ||||||||||||| ||||||| || ||||||||||||    
T  28967824 gtttcttaacggggactcattttttcttcctctaatagagggtccttaacgggaagtggtccttgttaagtaaggacc-cctattgaagatgct 28967916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 21848702 - 21848775
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgc 125  Q
    |||||||||||||||||||| |||||||||| | ||| | |||||| |||| ||||| | || |||| ||||||    
T  21848702 ttttttcttcctccaatggagggtccttaacgaggagtgatccttgctaagtaaggaacccctattggagatgc 21848775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 33669 - 33764
Alignment:
Q  31 ccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||| |||||||| || |||||||||||||||||||||| ||||||||||||  ||| ||||||||| ||| ||||||||| ||||| |||||||    
T  33669 ccgttccttaatggggactcattttttcttcctccaatgggaggtccttaacagggagtggtccttgtaaagtaaggacctcgcattggagatgct 33764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 38067715 - 38067610
Alignment:
Q  18 cttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccatt 117  Q
    |||||| | ||||| ||| |||||||| |||||||||||||||||||||||||  ||| |||||||  ||| ||||||||||||| ||||||||||||||    
T  38067715 cttatatagttacctgttccttaatggggattcattttttcttcctccaatgg-gggttcttaacagggagtggtccttgttaagtaaggacctcccatt 38067617  T
Q  118 gaagatg 124  Q
     ||||||    
T  38067616 aaagatg 38067610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 51175391 - 51175282
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| | || |||||| ||||| || || ||||||||||||||||||||||| ||||||||||   ||| ||||||||||||| ||||||| |||||    
T  51175391 ccttatatagttgcccgttccttaacggggactcattttttcttcctccaatggagggtccttaacggggagtggtccttgttaagtaaggaccccccat 51175292  T
Q  117 tgaagatgct 126  Q
    || |||||||    
T  51175291 tggagatgct 51175282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 45832345 - 45832419
Alignment:
Q  51 attttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgc 125  Q
    ||||||||||||||||||||| ||||||||||   ||| ||||||||||||| ||||||| ||||||||| ||||    
T  45832345 attttttcttcctccaatggagggtccttaactgggagtggtccttgttaagtaaggaccccccattgaaaatgc 45832419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 44992021 - 44992097
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||||||||||| ||||||||||   ||| ||||||||||||| ||||||| ||||||| |||||||    
T  44992021 tcattttttcttcctccaatggagggtccttaacggggagtggtccttgttaagtaaggacc-cccattggagatgct 44992097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 31768041 - 31768118
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||| ||||||| ||||||||||   ||| ||||||||||||| ||||||| ||||||  |||||||    
T  31768041 tcattttttcttccttcaatggagggtccttaacggggagtggtccttgttaagtaaggaccccccatttgagatgct 31768118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 40445603 - 40445542
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacc 110  Q
    |||||||||||| |||||||||| |||||||||   |||| ||||||||||||| |||||||    
T  40445603 tcattttttctttctccaatggagggtccttaatggagagtggtccttgttaagtaaggacc 40445542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 19850094 - 19850011
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaa 101  Q
    ||||||| |||||||||||||||||||  || |||||||||| |||||||||  |||||| |||| || ||  ||||||||||||    
T  19850094 ccttatataattacccgtttcttaatgaggactcattttttcgtcctccaat-aaaggtctttaataaggaatggtccttgttaa 19850011  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 32409379 - 32409315
Alignment:
Q  38 ttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaag 102  Q
    |||| ||||| |||||| |||||||||||||||| | ||||||||   ||| |||||||||||||    
T  32409379 ttaacggagactcatttgttcttcctccaatggaggatccttaacggggagtggtccttgttaag 32409315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 12191355 - 12191281
Alignment:
Q  51 attttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||| ||||| | ||||||||||   ||  ||||||||||||| ||||||| ||||||| |||||||    
T  12191355 attttttcttccttcaatgaagggtccttaacggggactggtccttgttaagtaaggacc-cccattggagatgct 12191281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 5e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 29637973 - 29638082
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||||||||||| ||| |||||||| || |||||||||||||| ||||||||| || ||||||||  || ||||||| ||||| ||||| |||||||    
T  29637973 ccttatacaattacctgttccttaatggggactcattttttcttcccccaatggaaagttcttaacaagaagtggtccttattaagtaaggatctcccat 29638072  T
Q  117 tgaagatgct 126  Q
    | || |||||    
T  29638073 taaaaatgct 29638082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 5423390 - 5423313
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||| ||||||| ||||||||||   ||| ||||||||||||| ||||||| ||||||| |||||||    
T  5423390 tcattttttcttccttcaatggagggtccttaacggggagtggtccttgttaagtaaggaccccccattggagatgct 5423313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 12796418 - 12796492
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    |||||||||||||||||||| |||  ||||||  ||| | ||||||||||| |||||||||| ||||||||||||    
T  12796418 ttttttcttcctccaatggagggtatttaacagggagtgatccttgttaagtaaggacctcctattgaagatgct 12796492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 41438048 - 41437972
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||| ||||||||||||||  |||| ||||||  ||| |||| |||||||  |||||||||||||||||||||||    
T  41438048 tcattttctcttcctccaatggg-ggtcgttaacagggagtggtctttgttaactaaggacctcccattgaagatgct 41437972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 1581365 - 1581286
Alignment:
Q  47 attcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||||||||||| |  ||||||||| |  || ||||||||||||  |||||||  |||||| |||||||    
T  1581365 attcattttttcttcctccaatgaagagtccttaacgagaagtggtccttgttaaataaggaccctccattggagatgct 1581286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 41439202 - 41439269
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaa 84  Q
    ||||||| | ||||||||| ||||||||| | ||||||| ||||||||||||  ||| ||||||||||    
T  41439202 ccttatatagttacccgttccttaatggaaactcattttctcttcctccaataaaagatccttaacaa 41439269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 47677146 - 47677220
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagat 123  Q
    ||||||||||||||||||||||| ||| |||||||  ||| | ||||||||||| ||||||||||||||||||||    
T  47677146 tcattttttcttcctccaatggagggttcttaacagggagtgatccttgttaagtaaggacctcccattgaagat 47677220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 13004308 - 13004416
Alignment:
Q  18 cttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccatt 117  Q
    |||||| | |||||||||  |||| || || |||||||||||||||| ||||| ||||||||||||  ||| |||  |||||||| ||||||||||||||    
T  13004308 cttatatagttacccgttctttaacggggactcattttttcttcctcgaatgggaggtccttaacagggagtggtatttgttaagtaaggacctcccatt 13004407  T
Q  118 gaagatgct 126  Q
     ||||||||    
T  13004408 aaagatgct 13004416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 45370806 - 45370717
Alignment:
Q  37 cttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||   ||| | |||||| |||  ||||||||||||||| |||||||    
T  45370806 cttaatggagactcattttttcttcctccaatggagagtccttaacggggagtgatccttggtaaataaggacctcccattggagatgct 45370717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 12705454 - 12705529
Alignment:
Q  51 attttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||||||||| ||||||||||   ||| |||| |||||||| || |||| |||||||||||||||    
T  12705454 attttttcttcctccaatggagggtccttaacggggagtggtcattgttaagtaatgaccccccattgaagatgct 12705529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 30627394 - 30627470
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    |||||||||||| |||||||||| ||||||||||   ||| ||||||||||||| ||||||| ||||||| |||||||    
T  30627394 tcattttttctttctccaatggagggtccttaacggggagtggtccttgttaagtaaggacc-cccattggagatgct 30627470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 35719093 - 35719161
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccatt 117  Q
    ||||||||||||||||||||||| ||||||||||   ||| ||||||||||||| || |||| ||||||    
T  35719093 tcattttttcttcctccaatggagggtccttaacggggagtggtccttgttaagtaatgaccccccatt 35719161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 45468237 - 45468298
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacc 110  Q
    |||||||||||||||| |||| ||||||||||||  |||| ||||||| ||||| |||||||    
T  45468237 tcattttttcttcctcaaatgaaaggtccttaacggagagtggtccttattaagtaaggacc 45468298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 1834849 - 1834754
Alignment:
Q  31 ccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||| ||||| || || || ||||||||||||| |||||| ||||||||||   ||| ||||||||||||| ||||||  ||||||  |||||||    
T  1834849 ccgttccttaacggggactcgttttttcttcctctaatggagggtccttaacggggagtggtccttgttaagtaaggactccccattagagatgct 1834754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 27163297 - 27163367
Alignment:
Q  53 tttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatg 124  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||||||| ||| | | ||||||| |||||    
T  27163297 tttttcttcctccaatggg-ggtccttaacaatgagcggtccttgttaagtaagaaacccccattggagatg 27163367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 5939702 - 5939625
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||||||||||  |||||||||    ||| ||||||||||||| ||||| | ||||||  |||||||    
T  5939702 tcattttttcttcctccaatggggggtccttaatggggagtggtccttgttaagtaaggaacccccattagagatgct 5939625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 52898341 - 52898293
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaag 102  Q
    |||||||||||||||||||  ||||||||| | |||| |||||||||||||    
T  52898341 ttttttcttcctccaatgg--ggtccttaatatagagtggtccttgttaag 52898293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 583935 - 583826
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| | || |||||| ||||| || || ||||||||||||||||||||||| ||||||||||   ||  ||||||||||||| ||||||| |||||    
T  583935 ccttatatagttgcccgttccttaagggggactcattttttcttcctccaatggagggtccttaacggggattggtccttgttaagtaaggaccccccat 583836  T
Q  117 tgaagatgct 126  Q
    || |||||||    
T  583835 tggagatgct 583826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 48293821 - 48293930
Alignment:
Q  17 ccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccat 116  Q
    ||||||| | ||| ||||||||| | || || | ||||||||||||||||||||| | ||||||||   ||| |||||||||| || ||||||||| |||    
T  48293821 ccttatatagttatccgtttcttcacggggacttattttttcttcctccaatggaggatccttaacggggagtggtccttgtttagtaaggacctctcat 48293920  T
Q  117 tgaagatgct 126  Q
    || |||||||    
T  48293921 tggagatgct 48293930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 8488980 - 8489058
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgtt-aagcaaggacctcccattgaagatgct 126  Q
    |||||||||||||||||||||||  ||||||||||  |||  ||||||||| ||| ||||||| ||||||| |||||||    
T  8488980 tcattttttcttcctccaatggagagtccttaacagggagtagtccttgttaaagtaaggaccccccattggagatgct 8489058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 38975289 - 38975364
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgc 125  Q
    ||||||||||||||||||||||| ||||||||||   ||| ||| |||||| || || |||| ||||||||||||||    
T  38975289 tcattttttcttcctccaatggagggtccttaactgggagtggttcttgtttagtaaagacc-cccattgaagatgc 38975364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 8515789 - 8515867
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgtt-aagcaaggacctcccattgaagatgct 126  Q
    |||||||||||||||||||||||  |||||||||   |||  ||||||||| ||| ||||||| ||||||| |||||||    
T  8515789 tcattttttcttcctccaatggagagtccttaacggggagtagtccttgttaaagtaaggaccccccattggagatgct 8515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 17503457 - 17503513
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaagga 108  Q
    |||||||||||||||||||||  ||||||||   ||| ||||||||||||| |||||    
T  17503457 ttttttcttcctccaatggaaaatccttaacggggagtggtccttgttaagtaagga 17503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 17549757 - 17549701
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaagga 108  Q
    |||||||||||||||||||||  ||||||||   ||| ||||||||||||| |||||    
T  17549757 ttttttcttcctccaatggaaaatccttaacggggagtggtccttgttaagtaagga 17549701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 6811363 - 6811286
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||| ||||||| |||||||||||  ||| |||| |||||||| ||||||| |||||||||||||||    
T  6811363 tcattttttcttccttcaatggagggtccttaacagggagtggtctttgttaagtaaggaccccccattgaagatgct 6811286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 17096582 - 17096659
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||||||||||||||||||| |||||||||| | ||| ||||||||| ||| || |||| ||||||| |||||||    
T  17096582 tcattttttcttcctccaatggagggtccttaacgaggagtggtccttgtcaagtaatgaccccccattggagatgct 17096659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 27753320 - 27753396
Alignment:
Q  49 tcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    |||||||||||||||| ||||   ||| |||||||  |||  |||||||||||| |||||||| ||||||||||||||    
T  27753320 tcattttttcttcctctaatgtggggttcttaacagggagtcgtccttgttaagtaaggacct-ccattgaagatgct 27753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 15958954 - 15959033
Alignment:
Q  31 ccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacc 110  Q
    |||||||||||  | |||||||||||||||||||||||||| ||| |||||| | ||| ||||||| ||||| |||||||    
T  15958954 ccgtttcttaacagggattcattttttcttcctccaatggagggttcttaacgatgagtggtccttcttaagtaaggacc 15959033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 2552712 - 2552637
Alignment:
Q  6 ggagagaaaacccttatacaattacccgtttcttaatggagattcattttttcttcctccaatggaaggtccttaa 81  Q
    ||||||| || ||||||| | ||||||||| ||||| || || ||||||||||||||||| ||||  |||||||||    
T  2552712 ggagagagaatccttatatagttacccgttccttaacggggactcattttttcttcctccgatggggggtccttaa 2552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 2552276 - 2552227
Alignment:
Q  77 cttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    ||||||| |||| || |||||||||| ||||||||||||||| |||||||    
T  2552276 cttaacagagagtggcccttgttaagtaaggacctcccattggagatgct 2552227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 4740506 - 4740562
Alignment:
Q  52 ttttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaagga 108  Q
    |||||||||||||||||| | ||||||||||   ||| ||||||||||||| |||||    
T  4740506 ttttttcttcctccaatgaagggtccttaacggcgagtggtccttgttaagtaagga 4740562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 30352238 - 30352293
Alignment:
Q  16 cccttatacaattacccgtttcttaatggagattcattttttcttcctccaatgga 71  Q
    ||||||| || |||||| || |||||| | || |||||||||||||||||||||||    
T  30352238 cccttatgcagttacccattccttaatagggactcattttttcttcctccaatgga 30352293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 175248 - 175155
Alignment:
Q  32 cgtttcttaatggagattcattttttcttcctccaatggaaggtccttaacaaagaggggtccttgttaagcaaggacctcccattgaagatgct 126  Q
    |||| ||||||||| | ||||||||||||||| ||||||  |||||| ||||  ||| | ||||||||| |||||||||  |||||| |||||||    
T  175248 cgttccttaatggaaactcattttttcttcctacaatgg-gggtcctcaacagggagagatccttgttaggcaaggaccagccattggagatgct 175155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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