View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-13 (Length: 138)
Name: Solexa-NF5845-13
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 4e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 45390234 - 45390098
Alignment:
| Q |
2 |
tgaagaactccgaggtaagtgtgaagggggtgtacgatccagcaatgttggttgaatatgtgtacaagagaattgggaagcatgcagtgatcatgaagga |
101 |
Q |
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| T |
45390234 |
tgaagaactccgaggtaagtgtgaagggggtgtatgatccagcaatgttggttgaatatgtgtacaagagaattgggaagcatgcagtgatcatgaagga |
45390135 |
T |
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| Q |
102 |
agagaaagtggatgaggaagccaaagctgaggaagag |
138 |
Q |
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| T |
45390134 |
agagaaagtggatgtggaagccaaagctgaggaagag |
45390098 |
T |
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Target: chr3; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 45386083 - 45385978
Alignment:
| Q |
2 |
tgaagaactccgaggtaagtgtgaagggggtgtacgatccagcaatgttggttgaatatgtgtacaagagaattgggaagcatgcagtgatcatgaagga |
101 |
Q |
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|||||||||| |||||||| |||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
45386083 |
tgaagaactctgaggtaagcgtgaagggagtgtatgattcagcaatgttggttgaatacatgtacaagagaattgggaagcatgcagtgattgtgaagga |
45385984 |
T |
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| Q |
102 |
agagaa |
107 |
Q |
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|||||| |
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| T |
45385983 |
agagaa |
45385978 |
T |
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