View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-17 (Length: 131)
Name: Solexa-NF5845-17
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 1e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 31024056 - 31024179
Alignment:
| Q |
8 |
tttcttactctaatcgttgtacattacttggtttagagttattaatatatttggtctttgnnnnnnnttagagaagaatatccataatacacattggtct |
107 |
Q |
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| T |
31024056 |
tttcttactctaatcgttgtacattacttggtttagagttattaatatatttggtctttgaaaaaaattagagaagaatatccataatacacattggtct |
31024155 |
T |
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| Q |
108 |
aaactcaaaattttagaacttgca |
131 |
Q |
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| T |
31024156 |
aaactcaaaattttagaacttgca |
31024179 |
T |
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Target: chr5 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 28109786 - 28109898
Alignment:
| Q |
8 |
tttcttactctaatcgttgtacat----tacttggtttagagttattaatatatttggtcttt-gnnnnnnnttagagaagaatatccataatacacatt |
102 |
Q |
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||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |
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| T |
28109786 |
tttcttactctaatcattgtacttcatgtacttggtttagagttattaatatatttggtctttagaaaaaaattagagaagaatatccataatacacgtt |
28109885 |
T |
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| Q |
103 |
ggtctaaactcaa |
115 |
Q |
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| T |
28109886 |
ggactaaactcaa |
28109898 |
T |
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