View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5845-18 (Length: 128)
Name: Solexa-NF5845-18
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-18 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 124; Significance: 3e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26805601 - 26805474
Alignment:
| Q |
1 |
tagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaactttgaagacaatattgccgttgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26805601 |
tagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaaactttaactttgaagacaatattgccgttgaca |
26805502 |
T |
|
| Q |
101 |
tcggtgacgacgaagtttccgtctgaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26805501 |
tcggtgacgacgaagtttccgtctgaaa |
26805474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 26795707 - 26795581
Alignment:
| Q |
2 |
agggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaactttgaagacaatattgccgttgacat |
101 |
Q |
| |
|
||||||||||| |||||| | || ||||||| |||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26795707 |
agggtggtgatggggttaccagcagcatcaagcaagacacggcgatcacggagggttaagagagagcctttaactttgaagacaatattgccgttgacat |
26795608 |
T |
|
| Q |
102 |
cggtgacgacgaagtttccgtctgaaa |
128 |
Q |
| |
|
| || || |||||||||||||||||| |
|
|
| T |
26795607 |
cagtaacagcgaagtttccgtctgaaa |
26795581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 26800477 - 26800372
Alignment:
| Q |
23 |
gcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| || || |||||||||||||| |||||| | |||||||| | |
|
|
| T |
26800477 |
gcggcatcaaccaagacacggcggtcacggagggttaagagagaaccttttactttgaacacgatgttgccgttgacatcagtgacggcaaagtttccat |
26800378 |
T |
|
| Q |
123 |
ctgaaa |
128 |
Q |
| |
|
|||||| |
|
|
| T |
26800377 |
ctgaaa |
26800372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26789798 - 26789721
Alignment:
| Q |
1 |
tagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaacttt |
78 |
Q |
| |
|
|||||||||||| |||||| | | ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
26789798 |
tagggtggtgatggggttaccggaggcatcaaccaagacacggcggtcacggagggttaagagagaacctttgacttt |
26789721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26836298 - 26836197
Alignment:
| Q |
1 |
tagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaactttgaagacaatattgccgttgaca |
100 |
Q |
| |
|
||||||| |||| |||||| | || |||||||||||||||||| ||||||| | ||| || | |||||| ||||||||||| || || |||||||||||| |
|
|
| T |
26836298 |
tagggtgatgatggggttaccggccgcatcaaccaagacacggtggtcacgtatggtaaacacagaacccttaactttgaaaactatgttgccgttgaca |
26836199 |
T |
|
| Q |
101 |
tc |
102 |
Q |
| |
|
|| |
|
|
| T |
26836198 |
tc |
26836197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University