View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-19 (Length: 127)
Name: Solexa-NF5845-19
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 38767945 - 38767826
Alignment:
| Q |
8 |
cttaccatagccttggcatacaaaggcacaagtagtgacacgcaagaattcttcaatctcggagcttaaggctgcacctccagatattattagtctaaca |
107 |
Q |
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| T |
38767945 |
cttaccatagccttggcatacaaaggcacaagtagtgacacgcaagaattcttcaatctcggagcttaaggctgcacctccagatattattagtctaaca |
38767846 |
T |
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| Q |
108 |
cgtccccctagccttgcttt |
127 |
Q |
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| T |
38767845 |
cgtccacctagccttgcttt |
38767826 |
T |
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Target: chr7 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 44996599 - 44996708
Alignment:
| Q |
8 |
cttaccatagccttggcatacaaaggcacaagtagtgacacgcaagaattcttcaatctcggagcttaaggctgcacctccagatattattagtctaaca |
107 |
Q |
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| T |
44996599 |
cttaccatagccttgacatacaaaagcaccagaagtaacacgcaaaaattcttcaatctctgaactcaatggtgcacctccggttattattagtcgaaca |
44996698 |
T |
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| Q |
108 |
cgtcccccta |
117 |
Q |
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| T |
44996699 |
cgtcctccta |
44996708 |
T |
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