View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-2 (Length: 260)
Name: Solexa-NF5845-2
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-2 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 8718882 - 8718639
Alignment:
| Q |
7 |
agttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgt |
106 |
Q |
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| T |
8718882 |
agttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgt |
8718783 |
T |
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| Q |
107 |
ttttatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttagtc |
206 |
Q |
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| T |
8718782 |
ttttatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttagtc |
8718683 |
T |
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| Q |
207 |
aaatatttgtgtattttcttttttacacacattatttatttcat |
250 |
Q |
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| T |
8718682 |
aaatatttgtgtattttcttttttacacacattatttatttcat |
8718639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 8672572 - 8672327
Alignment:
| Q |
7 |
agttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgt |
106 |
Q |
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| T |
8672572 |
agttgttcaagatttggaagctttcattaaatgctcatcattagactaaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgt |
8672473 |
T |
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| Q |
107 |
ttttat--cgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttag |
204 |
Q |
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| T |
8672472 |
ttttatatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttag |
8672373 |
T |
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| Q |
205 |
tcaaatatttgtgtattttcttttttacacacattatttatttcat |
250 |
Q |
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| T |
8672372 |
tcaaatatttgtgtattttcttttttacacacattatttatttcat |
8672327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 8590909 - 8590843
Alignment:
| Q |
150 |
aaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgta |
219 |
Q |
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| T |
8590909 |
aaatagagggttattggtatcattattag---acatttattctcttgttattaagtcaaatatttctgta |
8590843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 8590958 - 8590925
Alignment:
| Q |
119 |
aacatgatagttctaatttatttggagtgaaaaa |
152 |
Q |
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| T |
8590958 |
aacatgatagttctaatttatttggagtgaaaaa |
8590925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 23440032 - 23440104
Alignment:
| Q |
7 |
agttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattc |
79 |
Q |
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| T |
23440032 |
agttgttcaagattttgaagctttcattagatgctcatcactggactgaaagttgctttaatcaagttgattc |
23440104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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