View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-22 (Length: 127)
Name: Solexa-NF5845-22
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-22 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 5e-57; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 26805324 - 26805443
Alignment:
| Q |
8 |
atatcatcgctatcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaata |
107 |
Q |
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| T |
26805324 |
atatcatcactatcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaata |
26805423 |
T |
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| Q |
108 |
ttgtgctccatatccattgg |
127 |
Q |
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| T |
26805424 |
ttgtgctccgtatccattgg |
26805443 |
T |
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Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 26824166 - 26824263
Alignment:
| Q |
25 |
atggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccatatcc |
122 |
Q |
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| T |
26824166 |
atggcttatccttgtcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccataatatgccctcaatattgtgatccgtatcc |
26824263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 26836036 - 26836138
Alignment:
| Q |
17 |
ctatcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctcc |
116 |
Q |
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| T |
26836036 |
ctatcatcatggcttatccttatcaaccacaaccttcttcctctgca---ccgatgccaccactccccaccaccataataggccctcaatattgtactcc |
26836132 |
T |
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| Q |
117 |
atatcc |
122 |
Q |
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| T |
26836133 |
atatcc |
26836138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26824087 - 26824134
Alignment:
| Q |
18 |
tatcatcatggcttatccttatcaaccacaaccatctgcctctgcacc |
65 |
Q |
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| T |
26824087 |
tatcatcatggcttatccttatcaaccacaaccttctgcctctgcacc |
26824134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 26800234 - 26800336
Alignment:
| Q |
20 |
tcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccata |
119 |
Q |
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| T |
26800234 |
tcattatggcttatccttatcaaccacagcaatatgcttctgcaccgccgatgccggcacaccccactgccatattcggacagcaatattgtgctccata |
26800333 |
T |
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| Q |
120 |
tcc |
122 |
Q |
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||| |
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| T |
26800334 |
tcc |
26800336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26795447 - 26795488
Alignment:
| Q |
24 |
catggcttatccttatcaaccacaaccatctgcctctgcacc |
65 |
Q |
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| T |
26795447 |
catggcttatccttatccagcacagccatctgcctctgcacc |
26795488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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