View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5845-23 (Length: 127)

Name: Solexa-NF5845-23
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5845-23
Solexa-NF5845-23
[»] chr2 (8 HSPs)
chr2 (8-127)||(39215328-39215447)
chr2 (8-83)||(39422018-39422093)
chr2 (11-65)||(39137598-39137652)
chr2 (11-65)||(39487723-39487777)
chr2 (8-96)||(39473637-39473725)
chr2 (13-66)||(39415057-39415110)
chr2 (32-75)||(39369877-39369920)
chr2 (11-66)||(39414971-39415026)
[»] chr7 (1 HSPs)
chr7 (11-75)||(19807538-19807602)
[»] chr8 (1 HSPs)
chr8 (8-56)||(44951214-44951262)
[»] scaffold0250 (1 HSPs)
scaffold0250 (8-64)||(4265-4321)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 6e-47; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 39215447 - 39215328
Alignment:
Q  8 ttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaacatcannnnnn 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          
T  39215447 ttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaacagcatttttt 39215348  T
Q  108 nagatacaagttcattcatc 127  Q
     |||||||||||||||||||    
T  39215347 tagatacaagttcattcatc 39215328  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 39422018 - 39422093
Alignment:
Q  8 ttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttca 83  Q
    ||||||||||||| ||||||| ||||||||||| ||||| | ||||||| ||||||| | | |||||||| |||||    
T  39422018 ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattcgagatccttca 39422093  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 39137652 - 39137598
Alignment:
Q  11 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctt 65  Q
    |||||||| | ||||||||||||||||||| ||||||||||  ||||||||||||    
T  39137652 aattcctcttcttttgactggaactccttcatttgttcttcatattgcttttctt 39137598  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 39487723 - 39487777
Alignment:
Q  11 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctt 65  Q
    |||||||||| ||||||||||||||||||| ||||||||||   |||||||||||    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttctt 39487777  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 39473637 - 39473725
Alignment:
Q  8 ttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaa 96  Q
    ||||||||||||| |||||||||||||||||||  |||| | |  |||| ||||||||| | |||||| | ||||| ||| ||||||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaa 39473725  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 39415057 - 39415110
Alignment:
Q  13 ttcctcctgttttgactggaactccttcttttgttcttcgaattgcttttcttt 66  Q
    |||||||| ||||||||||||||| ||| || |||||| |||||| ||||||||    
T  39415057 ttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttt 39415110  T

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Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 39369920 - 39369877
Alignment:
Q  32 aactccttcttttgttcttcgaattgcttttctttggtttcgag 75  Q
    ||||||||||||||| |||| |||||||||||||| | ||||||    
T  39369920 aactccttcttttgtccttcaaattgcttttcttttgattcgag 39369877  T

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Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 39414971 - 39415026
Alignment:
Q  11 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttcttt 66  Q
    |||||| ||| |||||| |||||||||||| ||||||||  ||||| |||||||||    
T  39414971 aattccccctcttttgagtggaactccttcatttgttctctgaatttcttttcttt 39415026  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 19807602 - 19807538
Alignment:
Q  11 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgag 75  Q
    |||||||| | ||||||||||||||||||| ||||||||||  ||||||||||||  ||||||||    
T  19807602 aattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgag 19807538  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 44951214 - 44951262
Alignment:
Q  8 ttaaattcctcctgttttgactggaactccttcttttgttcttcgaatt 56  Q
    ||||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  44951214 ttaaattcctcctcttttgactgaaactccttctcttgttctttgaatt 44951262  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 4321 - 4265
Alignment:
Q  8 ttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttct 64  Q
    ||||||||||||| ||||||||| |||||||||| |||| ||| ||||  |||||||    
T  4321 ttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttct 4265  T

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