View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-27 (Length: 116)
Name: Solexa-NF5845-27
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-27 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 2e-52; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39214735 - 39214850
Alignment:
| Q |
1 |
gaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaat |
100 |
Q |
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| T |
39214735 |
gaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaacccataaatcattttcctcgctgaagaaagaccttgctatgttagaaaaat |
39214834 |
T |
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| Q |
101 |
tatttgaggaatgcaa |
116 |
Q |
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| T |
39214835 |
tatttgaggaatgcaa |
39214850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39601864 - 39601979
Alignment:
| Q |
1 |
gaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaat |
100 |
Q |
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| T |
39601864 |
gaagatgatattcctttgttggatttaattaaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaaggccttgcattgttagaaaact |
39601963 |
T |
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| Q |
101 |
tatttgaggaatgcaa |
116 |
Q |
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| T |
39601964 |
catttcaggaaggcaa |
39601979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 39220086 - 39220144
Alignment:
| Q |
52 |
gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgagga |
110 |
Q |
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| T |
39220086 |
gataaatcattttcctcgctgaagaaagaccttgcggtgttagaaaaattatttgagga |
39220144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 39450414 - 39450484
Alignment:
| Q |
43 |
aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatg |
113 |
Q |
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| T |
39450414 |
aaattaactgataaatcattttcctcgctgaagaaagaccttacattgttagaaaaattatttgaggaatg |
39450484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 44614349 - 44614464
Alignment:
| Q |
1 |
gaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaat |
100 |
Q |
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| T |
44614349 |
gaagatgatattccttcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaaaaat |
44614448 |
T |
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| Q |
101 |
tatttgaggaatgcaa |
116 |
Q |
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| T |
44614449 |
catttgaggaatgcaa |
44614464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 39382358 - 39382297
Alignment:
| Q |
55 |
aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaa |
116 |
Q |
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| T |
39382358 |
aaatcgttttcctcgctgaagaaagaccttacgctgttagaagaattatttgtggaatgcaa |
39382297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 39479331 - 39479278
Alignment:
| Q |
27 |
aattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaaga |
80 |
Q |
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| T |
39479331 |
aattaaaaggtcgggaaaatcgactgataaatcattttcctcgctgaagaaaga |
39479278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 39151816 - 39151856
Alignment:
| Q |
46 |
tcaaccgataaatcattttccttgctgaagaaagaccttgc |
86 |
Q |
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| T |
39151816 |
tcaactgataaatcaatttccttgctgaagaaagagcttgc |
39151856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 39199630 - 39199566
Alignment:
| Q |
52 |
gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaa |
116 |
Q |
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|||||||||||||||| |||||||||||| ||| | || |||| |||||||| |||||||||| |
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| T |
39199630 |
gataaatcattttcctcgctgaagaaagagcttacgctgctagaagaattatttaaggaatgcaa |
39199566 |
T |
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