View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-33 (Length: 90)
Name: Solexa-NF5845-33
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-33 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 386592 - 386529
Alignment:
| Q |
27 |
tgctataagggtggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcg |
90 |
Q |
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| T |
386592 |
tgctataagggcggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcg |
386529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 38728951 - 38729013
Alignment:
| Q |
28 |
gctataagggtggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcg |
90 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38728951 |
gctataagggcggctccaacagacaagtttctaacatcaagggaccaagctatgtgctgatcg |
38729013 |
T |
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