View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-36 (Length: 70)
Name: Solexa-NF5845-36
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-36 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 43532232 - 43532169
Alignment:
| Q |
7 |
aactataataacaacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatc |
70 |
Q |
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| T |
43532232 |
aactataataacaacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatc |
43532169 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 24127097 - 24127150
Alignment:
| Q |
17 |
acaacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatc |
70 |
Q |
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| T |
24127097 |
acaacaattcaccaaccatcaagtagactctttcacaaatttgacaagttgatc |
24127150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 24145426 - 24145479
Alignment:
| Q |
17 |
acaacaatccatcaaccatcaagcagactttttcacaagtttgataagttgatc |
70 |
Q |
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| T |
24145426 |
acaacaattcaccaaccatcaagtagactctttcacaaatttgacaagttgatc |
24145479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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