View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5845-7 (Length: 145)
Name: Solexa-NF5845-7
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5845-7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 8718057 - 8718187
Alignment:
| Q |
12 |
atgaacaactgagttgctactaggatttggcatttgaaatctcattttaaatatccatatagttttagttcttacctatctactaataatttatgtactg |
111 |
Q |
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| T |
8718057 |
atgagcaaatgagttgctactaggatttggcatttgaaatctcattttaaatatccatatagttttagttcttacct---ttctaataatttatgtactg |
8718153 |
T |
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| Q |
112 |
aggatccataaagattgacatttgaaatttcttt |
145 |
Q |
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| T |
8718154 |
aggatccataaagattgacatttgaaatttcttt |
8718187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 23442730 - 23442606
Alignment:
| Q |
21 |
tgagttgctactaggatttggcatttgaaatctcattttaaatatccatatagttttagttcttacctatcta-ctaataatttatgtactgaggatcca |
119 |
Q |
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| T |
23442730 |
tgagttgctactaggatttgccatttgaaatctcatttaaaatatccttatagttttatttcttac-tacctttctaatcatttatgtactgaggatcca |
23442632 |
T |
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| Q |
120 |
taaagattgacatttgaaatttcttt |
145 |
Q |
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| T |
23442631 |
taaagactgatatttggaatttcttt |
23442606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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