View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5845-8 (Length: 143)

Name: Solexa-NF5845-8
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5845-8
Solexa-NF5845-8
[»] chr2 (2 HSPs)
chr2 (4-143)||(8718335-8718471)
chr2 (59-128)||(8672078-8672147)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 8718335 - 8718471
Alignment:
Q  4 aagaaaggaaacaacaacaaacaagaggagggtgcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgtt 103  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8718335 aagaatggaaacaacaacaaacaagaggagggggcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcccgtt 8718434  T
Q  104 atttagctggcatttgtggattggtactggcctaatccaa 143  Q
    ||||||||||||||||||||||||   |||||||||||||    
T  8718435 atttagctggcatttgtggattgg---tggcctaatccaa 8718471  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 8672078 - 8672147
Alignment:
Q  59 atggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagctggcatttgtggattggt 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||    
T  8672078 atgggaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagcctgcatttaaggattggt 8672147  T

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