View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5846-8 (Length: 138)
Name: Solexa-NF5846-8
Description: NF5846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5846-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9433622 - 9433537
Alignment:
| Q |
1 |
aaaggaacaagcaaaggtacagcaccggattcaccgatcaaaacacgattatcagctcgattctttgcaagcaacctcaatttcgc |
86 |
Q |
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| T |
9433622 |
aaaggaacaagcaaaggtacagcaccggattcaccgatcaaaacacgattatcagctcgattctttgcaagcaacctcaatttcgc |
9433537 |
T |
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Target: chr5 (Bit Score: 62; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 38817350 - 38817289
Alignment:
| Q |
77 |
tcaatttcgcgttggattaccgattccaaaactctcttcactttccactattccttcaatct |
138 |
Q |
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| T |
38817350 |
tcaatttcgcgttggattaccgattccaaaactctcttcactttccactattccttcaatct |
38817289 |
T |
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