View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5848-1 (Length: 343)

Name: Solexa-NF5848-1
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5848-1
Solexa-NF5848-1
[»] chr7 (2 HSPs)
chr7 (7-213)||(40180345-40180551)
chr7 (290-340)||(40180628-40180678)
[»] chr1 (3 HSPs)
chr1 (19-213)||(29391463-29391657)
chr1 (18-213)||(41670397-41670592)
chr1 (82-209)||(40795770-40795897)
[»] chr4 (11 HSPs)
chr4 (16-213)||(34662125-34662322)
chr4 (82-213)||(26434021-26434152)
chr4 (82-213)||(26832732-26832863)
chr4 (82-213)||(26435801-26435932)
chr4 (19-212)||(23868730-23868923)
chr4 (19-212)||(24307221-24307414)
chr4 (82-212)||(23415859-23415989)
chr4 (82-212)||(23885825-23885955)
chr4 (82-209)||(23402075-23402202)
chr4 (82-209)||(23408690-23408817)
chr4 (82-209)||(23453522-23453649)
[»] chr8 (1 HSPs)
chr8 (88-211)||(29684699-29684822)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 40180345 - 40180551
Alignment:
Q  7 agaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaaga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180345 agaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaaga 40180444  T
Q  107 tatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180445 tatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggt 40180544  T
Q  207 ttcaacg 213  Q
    |||||||    
T  40180545 ttcaacg 40180551  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 40180628 - 40180678
Alignment:
Q  290 cggctcgagctttctgtgcgggcttctttgccgcgggtttcttctctgcct 340  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||||||||||    
T  40180628 cggctggagctttctctgcgggcttcttctccgcgggtttcttctctgcct 40180678  T

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Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 29391657 - 29391463
Alignment:
Q  19 acagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatga 118  Q
    ||||| |||||||||||||| || ||||||||||| |||||||| || | |||||| | ||| | ||||||||||||||||||||||||||| || ||||    
T  29391657 acagccgtttgaatctccctcgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatga 29391558  T
Q  119 aactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaacg 213  Q
    |||||||||| || |||||||| |||   |||| ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  29391557 aactgttcataatccccatagctttggaagaaatacctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacg 29391463  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 41670592 - 41670397
Alignment:
Q  18 aacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatg 117  Q
    ||||||||| || ||||||| |||||| || || ||||||||||| ||||| || |  |  || |||||||||||||| |||||||||||||| || |||    
T  41670592 aacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatg 41670493  T
Q  118 aaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaacg 213  Q
    || ||||||||||| ||||||||||||||||| | ||| || |||||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  41670492 aagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacg 41670397  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 40795897 - 40795770
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    |||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||||||| || |  || || |||||||||||||| || ||||    
T  40795897 gattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaa 40795798  T
Q  182 ccttgaagatgtatatcttgtaggtttc 209  Q
    ||||||||||||| ||||||||||||||    
T  40795797 ccttgaagatgtagatcttgtaggtttc 40795770  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 34662125 - 34662322
Alignment:
Q  16 ctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaa 115  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| || |  |  || ||||| |||||||| ||||| |||||||| || |    
T  34662125 ctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattga 34662224  T
Q  116 tgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaacg 213  Q
    ||||||||||||| || ||||| || |||||||| | ||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  34662225 tgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacg 34662322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 26434152 - 26434021
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||| || |||||||| | ||| || || |||||||| ||||||||||    
T  26434152 gattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttgtttcagaa 26434053  T
Q  182 ccttgaagatgtatatcttgtaggtttcaacg 213  Q
    ||||||||||||| |||||||| |||||||||    
T  26434052 ccttgaagatgtagatcttgtatgtttcaacg 26434021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 26832863 - 26832732
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||| || |||||||| | ||| || || || ||||| ||||||||||    
T  26832863 gattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaa 26832764  T
Q  182 ccttgaagatgtatatcttgtaggtttcaacg 213  Q
    ||||||||||||| |||||||| |||||||||    
T  26832763 ccttgaagatgtagatcttgtatgtttcaacg 26832732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 26435932 - 26435801
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| |||| ||||||||| |||||||| || ||||||||||||||||| ||||| || |||||||| | ||| || || || ||||| ||||||||||    
T  26435932 gattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaa 26435833  T
Q  182 ccttgaagatgtatatcttgtaggtttcaacg 213  Q
    ||||||||||||| |||||||| |||||||||    
T  26435832 ccttgaagatgtagatcttgtatgtttcaacg 26435801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 23868923 - 23868730
Alignment:
Q  19 acagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatga 118  Q
    |||||||| ||||| ||||| ||||| || || ||||||||||| || | ||| |  |  || ||||| ||||| |||||||| |||||||| || ||||    
T  23868923 acagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatga 23868824  T
Q  119 aactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaac 212  Q
    |||||||||| |||||||| || |||||||| | ||| || || || |||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  23868823 aactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaac 23868730  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 24307414 - 24307221
Alignment:
Q  19 acagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatga 118  Q
    |||||||| ||||| ||||| ||||| || || ||||||||||| || | ||| |  |  || ||||| ||||| |||||||| |||||||| || ||||    
T  24307414 acagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatga 24307315  T
Q  119 aactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaac 212  Q
    |||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||||||||||||||| || |||||||| ||||||||    
T  24307314 aactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaac 24307221  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 23415859 - 23415989
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| ||||||||||| | ||| || || || |||||||| |||||||    
T  23415859 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaa 23415958  T
Q  182 ccttgaagatgtatatcttgtaggtttcaac 212  Q
    | ||||||||||| |||||||| ||||||||    
T  23415959 ctttgaagatgtagatcttgtatgtttcaac 23415989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 23885955 - 23885825
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| ||||||||||| | ||| || || || |||||||| |||||||    
T  23885955 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaa 23885856  T
Q  182 ccttgaagatgtatatcttgtaggtttcaac 212  Q
    | ||||||||||| |||||||| ||||||||    
T  23885855 ctttgaagatgtagatcttgtatgtttcaac 23885825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 23402202 - 23402075
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| ||||||||||| | ||| || || || |||||||| |||||||    
T  23402202 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaa 23402103  T
Q  182 ccttgaagatgtatatcttgtaggtttc 209  Q
    | ||||||||||| |||||||| |||||    
T  23402102 ctttgaagatgtagatcttgtatgtttc 23402075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 23408690 - 23408817
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| || |||||||| | ||| || || || ||||| ||||||||||    
T  23408690 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaa 23408789  T
Q  182 ccttgaagatgtatatcttgtaggtttc 209  Q
    | ||||||||||| |||||||| |||||    
T  23408790 ctttgaagatgtagatcttgtatgtttc 23408817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 23453522 - 23453649
Alignment:
Q  82 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 181  Q
    ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| ||||||||||| | ||| || || || ||||| || |||||||    
T  23453522 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatgattcagaa 23453621  T
Q  182 ccttgaagatgtatatcttgtaggtttc 209  Q
    | ||||||||||| |||||||| |||||    
T  23453622 ctttgaagatgtagatcttgtatgtttc 23453649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 29684822 - 29684699
Alignment:
Q  88 tgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttga 187  Q
    ||||||||||||| |||||||||||| | ||||||||| || | ||||||||| || ||||||||||| ||  |||||||||| ||||| ||||||||||    
T  29684822 tgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttga 29684723  T
Q  188 agatgtatatcttgtaggtttcaa 211  Q
    | || |||||||||||||||||||    
T  29684722 atatatatatcttgtaggtttcaa 29684699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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