View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-13 (Length: 140)
Name: Solexa-NF5848-13
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 1316829 - 1316697
Alignment:
| Q |
8 |
catcactcatgaaatatgtaggcaaaaccatgaactactttcatgttgcaataaatactttcctaaattactcgataaggatttggcatatagcaatgta |
107 |
Q |
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| T |
1316829 |
catcactcatgaaatatgtaggcaaaaccatgaactactttcatgttgcaataaatactttcctaaattactcgattaggatttggcatatagcaatgta |
1316730 |
T |
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| Q |
108 |
ttcaaaaccatattcctgtctgtttgagagatc |
140 |
Q |
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| T |
1316729 |
ttcaaaaccatattcctgtctgtttgagagatc |
1316697 |
T |
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Target: chr1 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 43486938 - 43486869
Alignment:
| Q |
48 |
tcatgttgcaataaatactttcctaaattactcgataaggatttggcatatagcaatgtattcaaaacca |
117 |
Q |
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|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
43486938 |
tcatgttgcacaaaatactttcctaaattactctattaggatttggcatatagcaatgtattcaaaacca |
43486869 |
T |
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