View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5848-16 (Length: 139)

Name: Solexa-NF5848-16
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5848-16
Solexa-NF5848-16
[»] chr4 (4 HSPs)
chr4 (1-139)||(24724075-24724213)
chr4 (1-139)||(24732787-24732925)
chr4 (5-139)||(24693342-24693476)
chr4 (93-139)||(24748047-24748093)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 3e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24724075 - 24724213
Alignment:
Q  1 gagaaacctcttatcattgtagattcttcccatggggggccttcttcggtttttcttgtggtaccgggtttggatggacgaaatcaaacaatatctttac 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  24724075 gagaaacctcttatcattgtagattcttcccatggcgggccttcttcggtttttcttgtggtaccgggcttggatggacgaaatcaaacaatatctttag 24724174  T
Q  101 aatcacaaagcaataaagactgttacgtgtatagcgata 139  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  24724175 aatcacaaagcaataaagattgttacgtgcatagcgata 24724213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24732787 - 24732925
Alignment:
Q  1 gagaaacctcttatcattgtagattcttcccatggggggccttcttcggtttttcttgtggtaccgggtttggatggacgaaatcaaacaatatctttac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||     
T  24732787 gagaaacctcttatcattgtagattcttcccatggggggccttcatcggtttttcttgtggtaccaggattggatggacgaaatcaaacaatatctttag 24732886  T
Q  101 aatcacaaagcaataaagactgttacgtgtatagcgata 139  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  24732887 aatcacaaagcaataaagattgttacgtgcatagcgata 24732925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 24693342 - 24693476
Alignment:
Q  5 aacctcttatcattgtagattcttcccatggggggccttcttcggtttttcttgtggtaccgggtttggatggacgaaatcaaacaatatctttacaatc 104  Q
    ||||||||||  |||||||||| |||| ||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  24693342 aacctcttattgttgtagattcctcccttggcgggccttcttcagtttttcttgtggtaccaggcttggatggacgaaatcaaacaatatctttacaatc 24693441  T
Q  105 acaaagcaataaagactgttacgtgtatagcgata 139  Q
    ||||||||||||||| |||||||||||||||||||    
T  24693442 acaaagcaataaagattgttacgtgtatagcgata 24693476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 24748047 - 24748093
Alignment:
Q  93 atctttacaatcacaaagcaataaagactgttacgtgtatagcgata 139  Q
    ||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  24748047 atctttagaatcacaaagcaataaagattgttacgtgcatagtgata 24748093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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