View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-17 (Length: 138)
Name: Solexa-NF5848-17
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-17 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 48694273 - 48694410
Alignment:
| Q |
1 |
agagaagagacacttgaacaaaagttaaaagaaagtatcaagaacattgaaagacaatcatcacctgttgaagaactctctcaaattctgaagagagcag |
100 |
Q |
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| T |
48694273 |
agagaagagacacttgaacaaaagttaaaagaaagtatcaagaacattgaaagacaatcatcacctgttgaagaactctctcaaattctgaagagagcag |
48694372 |
T |
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| Q |
101 |
ataatttcttgcattttatactccaaaatgctcctgtt |
138 |
Q |
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| T |
48694373 |
ataatttcttgcattttatactccaaaatgctcctgtt |
48694410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 3456512 - 3456403
Alignment:
| Q |
29 |
aagaaagtatcaagaacattgaaagacaatcatcacctgttgaagaactctctcaaattctgaagagagcagataatttcttgcattttatactccaaaa |
128 |
Q |
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| T |
3456512 |
aagaaagtatagagactattgaaagacaatcatcacctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaa |
3456413 |
T |
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| Q |
129 |
tgctcctgtt |
138 |
Q |
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| T |
3456412 |
tgcacctgtt |
3456403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 3480878 - 3480790
Alignment:
| Q |
50 |
aaagacaatcatcacctgttgaagaactctctcaaattctgaagagagcagataatttcttgcattttatactccaaaatgctcctgtt |
138 |
Q |
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| T |
3480878 |
aaagacaatcatcacctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgtt |
3480790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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