View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-23 (Length: 130)
Name: Solexa-NF5848-23
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 8e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 8e-65
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 39404591 - 39404463
Alignment:
| Q |
2 |
atgaaaatagtgacttgttgtgttgaaatgatgagaaataatccttgcagtattgtgcatatatctatttgaaataagcatgctacttgttttactctat |
101 |
Q |
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| T |
39404591 |
atgaaaatagtgacttgttgtgttgaaatgatgagaaataatccttgtagtattgtgcatatatctatttgaaataagcatgctacttgttttactctat |
39404492 |
T |
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| Q |
102 |
tatctgtattctgttactttgatacagct |
130 |
Q |
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| T |
39404491 |
tatctgtattctgttactttgatacagct |
39404463 |
T |
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Target: chr8 (Bit Score: 72; Significance: 4e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 12065069 - 12064950
Alignment:
| Q |
2 |
atgaaaatagtgacttgttgtgttgaaatgatgagaaataatccttgcagtattgtgcatatatctatttgaaataagcatgctacttgttttactctat |
101 |
Q |
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| T |
12065069 |
atgaaaatagtgacttgttgagttgaaatgat---aaacaatcctt--aatattgtgcatatatctatttgaaattagaatgttacttgttttactctat |
12064975 |
T |
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| Q |
102 |
tatctgtattctgttactttgatac |
126 |
Q |
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| T |
12064974 |
tatctgtattctgttgctttgatac |
12064950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 12068916 - 12068787
Alignment:
| Q |
2 |
atgaaaatagtgactt-gttgtgttgaaatgatgagaaataatccttgcagtattgtgcatatatctatttgaaataagcatgctacttgttttactcta |
100 |
Q |
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| T |
12068916 |
atgaaaatagtgaattcgttgagttgaaatgatgagaaatagtccgtgtaataatgtgcatatatctgtttcaaattagcaggttacttgttttactcta |
12068817 |
T |
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| Q |
101 |
ttatctgtattctgttactttgatacagct |
130 |
Q |
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| T |
12068816 |
ttatatgtatttctttgctttgatacagct |
12068787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 15972710 - 15972646
Alignment:
| Q |
64 |
atctatttgaaataagcatgctacttgttttactctattatctgtattctgttactttgatacag |
128 |
Q |
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| T |
15972710 |
atctatttgaaattagcatgttacttgttttactctaatatctatattctgttgctttgatacag |
15972646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 12097973 - 12098019
Alignment:
| Q |
2 |
atgaaaatagtgacttgttgtgttgaaatgatgagaaataatccttg |
48 |
Q |
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| T |
12097973 |
atgaaaatagttacttgtggggttgaaatgatgagaaataatccttg |
12098019 |
T |
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