View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-24 (Length: 130)
Name: Solexa-NF5848-24
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 1e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 4528660 - 4528780
Alignment:
| Q |
7 |
acttcgaaacaaaattgaagggaaaaagtttttgctcgtgttggatgacatgtggaatgaggatcgtgagttgtggcttaaattgaagagcttgttaatg |
106 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4528660 |
acttcgaaacaaaattcaagggaaaaagtttttgctcgtgttggatgacatgtggaacgaggatcgtgagttgtggcttaaattgaagagcttgttaatg |
4528759 |
T |
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| Q |
107 |
gaaggaggaaaaggaagcatg |
127 |
Q |
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| T |
4528760 |
gaaggaggaaaaggaagcatg |
4528780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 4518469 - 4518592
Alignment:
| Q |
7 |
acttcgaaacaaaattgaagggaaaaagtttttgctcgtgttggatgacatgtggaatgaggatcgtgagttgtggcttaaattgaagagcttgttaatg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||| |
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| T |
4518469 |
acttagaaacaaaattgaagggaaaaagtttttgcttgtgttagatgacgtgtggaatgaggatcatgagttgtggcttaaattgaagagcatgttcatg |
4518568 |
T |
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| Q |
107 |
gaaggaggaaaaggaagcatgata |
130 |
Q |
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| T |
4518569 |
gaaggtggaaaaggaagtatgata |
4518592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 4497416 - 4497532
Alignment:
| Q |
14 |
aacaaaattgaagggaaaaagtttttgctcgtgttggatgacatgtggaatgaggatcgtgagttgtggcttaaattgaagagcttgttaatggaaggag |
113 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||| |
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| T |
4497416 |
aacaaaattgaagggaaaaagtttttgcttgtgttagatgacgtgtggaatgaggatcatgagttgtggcttaaattgaagagtatgttcatggatggag |
4497515 |
T |
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| Q |
114 |
gaaaaggaagcatgata |
130 |
Q |
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|||||||||| |||||| |
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| T |
4497516 |
gaaaaggaagtatgata |
4497532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 4399233 - 4399110
Alignment:
| Q |
7 |
acttcgaaacaaaattgaagggaaaaagtttttgctcgtgttggatgacatgtggaatgaggatcgtgagttgtggcttaaattgaagagcttgttaatg |
106 |
Q |
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|||| ||||||||||| ||| ||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| |
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| T |
4399233 |
acttagaaacaaaattaaagagaaaaagtttttgcttgtgctagatgacatgtggaatgtggatcgtgagttgtggcttcaattgaagcatatgttgatg |
4399134 |
T |
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| Q |
107 |
gaaggaggaaaaggaagcatgata |
130 |
Q |
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| T |
4399133 |
gaaggaggaaaaggaagcatgata |
4399110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 1e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 18035060 - 18034937
Alignment:
| Q |
7 |
acttcgaaacaaaattgaagggaaaaagtttttgctcgtgttggatgacatgtggaatgaggatcgtgagttgtggcttaaattgaagagcttgttaatg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||| |
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| T |
18035060 |
acttagaaacaaaattgaagggaaaaagtttttgcttgtgttagatgacgtgtggaatgaggatcatgagttgtggcttaaattgaagagcatgttcatg |
18034961 |
T |
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| Q |
107 |
gaaggaggaaaaggaagcatgata |
130 |
Q |
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||||| ||||||||||| |||||| |
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| T |
18034960 |
gaaggtggaaaaggaagtatgata |
18034937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 18046093 - 18046216
Alignment:
| Q |
7 |
acttcgaaacaaaattgaagggaaaaagtttttgctcgtgttggatgacatgtggaatgaggatcgtgagttgtggcttaaattgaagagcttgttaatg |
106 |
Q |
| |
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|||| ||||||||||| ||| ||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| |
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| T |
18046093 |
acttagaaacaaaattaaagagaaaaagtttttgcttgtgctagatgacatgtggaatgtggatcgtgagttgtggcttcaattgaagcatatgttgatg |
18046192 |
T |
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| Q |
107 |
gaaggaggaaaaggaagcatgata |
130 |
Q |
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|||||||||||||||||||||||| |
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| T |
18046193 |
gaaggaggaaaaggaagcatgata |
18046216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 31679622 - 31679576
Alignment:
| Q |
21 |
ttgaagggaaaaag-tttttgctcgtgttggatgacatgtggaatga |
66 |
Q |
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| T |
31679622 |
ttgaagggaaaaagatttttgtttgtgttggatgacatgtggaatga |
31679576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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