View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5848-3 (Length: 222)
Name: Solexa-NF5848-3
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-3 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0189 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20041 - 20262
Alignment:
| Q |
1 |
acagaccattgcaaggggaattgattttaggttccaggatatcaaatctctcttttacaagaaatttgtgcaagaatcaaagagaagttccgttaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20041 |
acagaccattgcaaggggaattgattttaggttccaggatatcaaatctctcttttacaagaaatttgtgcaagaatcaaagagaagttccgttaaccac |
20140 |
T |
|
| Q |
101 |
ggaaaagataaagtgaaagtttcagaaacctttttgttgaatcaaaactttcgaactcatgctggagttttgaaattatcccagagcaccattgagcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20141 |
ggaaaagataaagtgaaagtttcagaaacctttttgttgaatcaaaactttcgaactcatgctggagttttgaaattatcccagagcaccattgagcttc |
20240 |
T |
|
| Q |
201 |
tttatcgttctttacctcattc |
222 |
Q |
| |
|
||||||||| ||| |||||||| |
|
|
| T |
20241 |
tttatcgttttttccctcattc |
20262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 34603905 - 34603702
Alignment:
| Q |
1 |
acagaccattgcaaggggaattgattttaggttccaggatatcaaatctctctttt-acaagaaatttgtgcaagaatcaaagagaagttccgttaacca |
99 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||| |
|
|
| T |
34603905 |
acagaccatcgcaaggggaattgattttaagttccaggatatcaaatctctctttttacaagaagtttgtgctagaatcaaagagaagtgcctataacca |
34603806 |
T |
|
| Q |
100 |
cggaaaagataaagtgaaagtttcagaaacctttttgttgaatcaaaactttcgaactcatgctggagttttgaaattatcccagagcaccattgagctt |
199 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||| |||||||||| |
|
|
| T |
34603805 |
aggaaaggataaaatgaaagtttcagaattttttttgttgaatcagaactttcggactcatgctggagtgttgaaattgtctcagagcatcattgagctt |
34603706 |
T |
|
| Q |
200 |
cttt |
203 |
Q |
| |
|
|||| |
|
|
| T |
34603705 |
cttt |
34603702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University