View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5848-32 (Length: 127)

Name: Solexa-NF5848-32
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5848-32
Solexa-NF5848-32
[»] chr1 (23 HSPs)
chr1 (10-127)||(32536510-32536627)
chr1 (9-127)||(24482546-24482664)
chr1 (9-127)||(43505657-43505773)
chr1 (8-127)||(33740591-33740709)
chr1 (9-127)||(44744260-44744377)
chr1 (9-127)||(11707137-11707257)
chr1 (9-123)||(44156765-44156878)
chr1 (9-121)||(9680681-9680791)
chr1 (8-127)||(10373878-10373996)
chr1 (8-127)||(8742278-8742396)
chr1 (9-127)||(27134602-27134718)
chr1 (9-123)||(38623487-38623600)
chr1 (9-123)||(27326674-27326786)
chr1 (9-123)||(44432439-44432552)
chr1 (9-127)||(45217433-45217549)
chr1 (9-127)||(52580274-52580391)
chr1 (11-127)||(37327793-37327908)
chr1 (9-123)||(46585099-46585211)
chr1 (53-123)||(36723690-36723760)
chr1 (9-127)||(9034250-9034368)
chr1 (55-106)||(35392829-35392880)
chr1 (9-42)||(35392780-35392813)
chr1 (9-37)||(36723772-36723800)
[»] chr4 (22 HSPs)
chr4 (9-127)||(40034006-40034124)
chr4 (9-127)||(39633225-39633342)
chr4 (9-127)||(40278586-40278702)
chr4 (8-127)||(42342034-42342151)
chr4 (9-127)||(19169902-19170019)
chr4 (9-123)||(41904373-41904486)
chr4 (9-127)||(42987690-42987807)
chr4 (9-123)||(54283738-54283849)
chr4 (9-127)||(54444872-54444989)
chr4 (9-127)||(36927760-36927876)
chr4 (53-127)||(38035426-38035500)
chr4 (53-127)||(6955922-6955996)
chr4 (9-116)||(36076873-36076980)
chr4 (53-121)||(204567-204635)
chr4 (9-127)||(1565581-1565699)
chr4 (64-127)||(46614411-46614475)
chr4 (9-123)||(34017202-34017316)
chr4 (9-123)||(38392366-38392478)
chr4 (57-123)||(19538126-19538192)
chr4 (53-127)||(220453-220528)
chr4 (9-41)||(38035515-38035547)
chr4 (92-123)||(52647804-52647835)
[»] chr5 (18 HSPs)
chr5 (9-123)||(4000262-4000376)
chr5 (8-127)||(13968462-13968580)
chr5 (9-123)||(25752046-25752159)
chr5 (9-123)||(36498807-36498920)
chr5 (9-124)||(5380765-5380879)
chr5 (9-123)||(10623137-10623250)
chr5 (9-127)||(38090666-38090782)
chr5 (10-127)||(40988583-40988698)
chr5 (9-127)||(746679-746795)
chr5 (9-119)||(2745171-2745280)
chr5 (9-127)||(26394549-26394665)
chr5 (9-127)||(39047641-39047757)
chr5 (9-123)||(29235799-29235911)
chr5 (9-123)||(27500574-27500687)
chr5 (9-127)||(729746-729865)
chr5 (59-127)||(33159203-33159271)
chr5 (9-106)||(29835748-29835844)
chr5 (9-127)||(25525618-25525738)
[»] chr3 (26 HSPs)
chr3 (9-127)||(17754148-17754266)
chr3 (9-127)||(19055468-19055586)
chr3 (9-127)||(3021402-3021519)
chr3 (9-123)||(33981736-33981849)
chr3 (9-127)||(1587169-1587287)
chr3 (9-127)||(23336358-23336475)
chr3 (9-127)||(33237092-33237208)
chr3 (9-123)||(3937908-3938020)
chr3 (9-127)||(29492339-29492456)
chr3 (9-127)||(40278453-40278569)
chr3 (9-127)||(43354139-43354256)
chr3 (14-123)||(21576881-21576989)
chr3 (9-123)||(13268776-13268889)
chr3 (53-127)||(33778188-33778262)
chr3 (53-125)||(45149167-45149239)
chr3 (9-127)||(27655584-27655701)
chr3 (9-127)||(45970384-45970501)
chr3 (10-123)||(49316378-49316490)
chr3 (53-125)||(22847554-22847626)
chr3 (55-127)||(53082330-53082402)
chr3 (9-127)||(43914355-43914470)
chr3 (53-127)||(37089838-37089912)
chr3 (9-93)||(33778288-33778371)
chr3 (53-106)||(38667479-38667532)
chr3 (9-83)||(4070201-4070276)
chr3 (89-123)||(14899131-14899165)
[»] chr2 (14 HSPs)
chr2 (9-127)||(18060157-18060275)
chr2 (9-127)||(5438358-5438476)
chr2 (9-127)||(28587153-28587271)
chr2 (9-127)||(28636837-28636953)
chr2 (9-127)||(43207190-43207306)
chr2 (9-127)||(41726755-41726872)
chr2 (9-127)||(27481936-27482052)
chr2 (9-126)||(28150469-28150585)
chr2 (9-124)||(17540028-17540140)
chr2 (9-127)||(10574738-10574855)
chr2 (9-123)||(29366138-29366251)
chr2 (53-127)||(41286934-41287008)
chr2 (9-123)||(45159927-45160040)
chr2 (9-96)||(6081981-6082067)
[»] chr8 (17 HSPs)
chr8 (9-125)||(41392871-41392986)
chr8 (9-127)||(12764423-12764541)
chr8 (9-127)||(1143384-1143501)
chr8 (9-127)||(39584280-39584397)
chr8 (9-127)||(44671593-44671710)
chr8 (9-123)||(44868782-44868896)
chr8 (9-123)||(3178123-3178236)
chr8 (9-125)||(41575259-41575373)
chr8 (9-127)||(37262091-37262207)
chr8 (9-123)||(38256747-38256860)
chr8 (9-127)||(41542906-41543023)
chr8 (9-125)||(31204213-31204327)
chr8 (9-127)||(34055383-34055499)
chr8 (53-127)||(4484919-4484993)
chr8 (9-127)||(30728766-30728883)
chr8 (9-123)||(42994192-42994305)
chr8 (9-106)||(42355856-42355952)
[»] chr7 (23 HSPs)
chr7 (8-127)||(38450147-38450265)
chr7 (9-127)||(40259905-40260023)
chr7 (11-123)||(37710885-37710997)
chr7 (9-127)||(28294921-28295040)
chr7 (9-127)||(28293710-28293827)
chr7 (9-123)||(35668167-35668280)
chr7 (9-120)||(8296567-8296677)
chr7 (12-123)||(19071841-19071951)
chr7 (9-127)||(14313236-14313353)
chr7 (9-127)||(35434720-35434837)
chr7 (9-123)||(38184515-38184628)
chr7 (9-125)||(12231458-12231573)
chr7 (9-119)||(48343909-48344017)
chr7 (9-127)||(4236465-4236582)
chr7 (9-127)||(33210602-33210719)
chr7 (53-121)||(28311906-28311974)
chr7 (53-127)||(34345604-34345678)
chr7 (9-123)||(39880352-39880463)
chr7 (53-127)||(16083380-16083454)
chr7 (9-127)||(21366582-21366694)
chr7 (74-127)||(39767219-39767272)
chr7 (9-40)||(16083325-16083356)
chr7 (12-43)||(39767166-39767197)
[»] scaffold0672 (1 HSPs)
scaffold0672 (9-127)||(5694-5811)
[»] chr6 (9 HSPs)
chr6 (8-127)||(32596865-32596986)
chr6 (9-127)||(11641238-11641354)
chr6 (9-125)||(1798853-1798968)
chr6 (9-123)||(15192129-15192242)
chr6 (9-123)||(15468309-15468422)
chr6 (9-123)||(16894753-16894866)
chr6 (9-127)||(29723678-29723796)
chr6 (9-125)||(8590332-8590448)
chr6 (9-127)||(26582839-26582954)
[»] scaffold0474 (1 HSPs)
scaffold0474 (53-127)||(12509-12583)
[»] scaffold0214 (1 HSPs)
scaffold0214 (9-127)||(16253-16370)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-127)||(41888-42005)
[»] scaffold0067 (1 HSPs)
scaffold0067 (53-123)||(1182-1252)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-123)||(131225-131338)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 4e-42; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 32536510 - 32536627
Alignment:
Q  10 tcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgata 109  Q
    ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32536510 tcatgtgttttaaatatatacatatatagaagactttttttttacacaagttgataattatgttagagtatgcagtcataaagtacacaagtctttgata 32536609  T
Q  110 attgtgtgtccataaaga 127  Q
    ||||||||||||||||||    
T  32536610 attgtgtgtccataaaga 32536627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 24482546 - 24482664
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  24482546 ctcatgtgttttaaatatatacatatatagaagactttttttttacacaagttaataattatgttagagaatgcagtcataaagtacacaagtctttgat 24482645  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  24482646 aattgtgtgtccataaaga 24482664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 43505773 - 43505657
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  43505773 ctcatgtgttttaaatatatacatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 43505676  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  43505675 aattgtgtgtccataaaga 43505657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 33740709 - 33740591
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||  ||||||||||||||||||  ||||||||||||||||||||||||    
T  33740709 actcatgtgttttaaatatatacatatatagaagactttttttt-acacaagtttgtaattatgttagagtatgcggtcataaagtacacaagtctttga 33740611  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  33740610 taattgtgtgtccataaaga 33740591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 44744377 - 44744260
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  44744377 ctcatgtgttttaaatatatacatatatagaaga-attttttttacacaagttggtaattatgttagagtaagcagtcataaagtacacaagtctttgat 44744279  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  44744278 aattgtgtgtccataaaga 44744260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 11707257 - 11707137
Alignment:
Q  9 ctcatgtgttttaaatatatacatatata--gaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttg 106  Q
    |||||||||||||||||||||||||||||  ||||||         |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  11707257 ctcatgtgttttaaatatatacatatatatagaagactttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacgagtctttg 11707158  T
Q  107 ataattgtgtgtccataaaga 127  Q
    |||||||||||||||||||||    
T  11707157 ataattgtgtgtccataaaga 11707137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 44156765 - 44156878
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| |||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  44156765 ctcatgtgttttaaatatatacatatatataagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 44156863  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  44156864 aattgtgtgtccata 44156878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 9680791 - 9680681
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  9680791 ctcatgtgttttaaatatatacatatatagaagacttttttt--acacaagttggtaattatgttaaagtatgcagtcataaagtacacaagtctttgat 9680694  T
Q  109 aattgtgtgtcca 121  Q
    |||||||||||||    
T  9680693 aattgtgtgtcca 9680681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 10373878 - 10373996
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    |||||||||||||||||||||||||||||| |||||         |||||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  10373878 actcatgtgttttaaatatatacatatataaaagactttttttt-acacaagttggtaattatgttagagtatgcaatcataaagtacacaagtctttga 10373976  T
Q  108 taattgtgtgtccataaaga 127  Q
    |||||||||||| |||||||    
T  10373977 taattgtgtgtctataaaga 10373996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 8742396 - 8742278
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    ||||||||||||||||||||||||||||||  | ||         ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  8742396 actcatgtgttttaaatatatacatatatatgaaactttttttt-acacaagttggcaattatgttagagtatgcagtcataaagtacacaagtctttga 8742298  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  8742297 taattgtgtgtccataaaga 8742278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 27134602 - 27134718
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataa-agtacacaagtctttga 107  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||    
T  27134602 ctcatgtgttttaaatatatacatatatagaagactttttc---acacaagttgataattatgttaaagtatgcagtcataagagtacataagtctttga 27134698  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||| ||||||||||||    
T  27134699 taattgtatgtccataaaga 27134718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 38623600 - 38623487
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||    
T  38623600 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagttgataattatattaaagtatgcagtcataaagtacacaaatctttgat 38623502  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  38623501 aattgtgtgtccata 38623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 27326786 - 27326674
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||| |||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  27326786 ctcatgtgttttaaatata-acatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 27326689  T
Q  109 aattgtgtgtccata 123  Q
    |||||| ||||||||    
T  27326688 aattgtctgtccata 27326674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 44432552 - 44432439
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| |||||         |||||||||| ||||||||||| |||||| |||||||||||||| |||||||||||    
T  44432552 ctcatgtgttttaaatatatacatatatataagactttttttt-acacaagttggtaattatgttaaagtatgcagtcataaagtacataagtctttgat 44432454  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  44432453 aattgtgtgtccata 44432439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 45217549 - 45217433
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||  ||| ||||||||| |||||||||||    
T  45217549 ctcatgtgttttaaatatatacatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcggtcttaaagtacaaaagtctttgat 45217452  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||| ||||||||||    
T  45217451 aattgtgtatccataaaga 45217433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 52580391 - 52580274
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||| |||||||||||||||||||| ||         || |||||||||||||||||||||||||| ||||||||||||| |||||||||||     
T  52580391 ctcatgtgtttgaaatatatacatatatagaatactttttctt-acgcaagttgataattatgttagagtatgcagtcataaagtacgcaagtctttgaa 52580293  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  52580292 aattgtgtgtccataaaga 52580274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 37327793 - 37327908
Alignment:
Q  11 catgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataa 110  Q
    ||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||    
T  37327793 catgtgttttaaatatatacatatatagaaga-tttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagactttgataa 37327891  T
Q  111 ttgtgtgtccataaaga 127  Q
    || ||| ||||||||||    
T  37327892 ttatgtctccataaaga 37327908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 46585099 - 46585211
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||| |||||||||||||||          |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  46585099 ctcatgtgttttaaatatgtacatatatagaaga-tttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtc-ttgat 46585196  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  46585197 aattgtgtgtccata 46585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 36723760 - 36723690
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccata 123  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  36723760 acacaagttggtaattatgttagagcatgcagtcataaagtacacaagtctttgataattgtgtgtccata 36723690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 9034368 - 9034250
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataa-agtacacaagtctttga 107  Q
    |||||||||||||||||||||||||||||||||||          || |||||| |||||||||||||||||| | |||||| |||||||||||||||||    
T  9034368 ctcatgtgttttaaatatatacatatatagaagactttttttacgca-aagttggtaattatgttagagtatgcactcataagagtacacaagtctttga 9034270  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||| ||||||||||    
T  9034269 taattgtgtttccataaaga 9034250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 35392829 - 35392880
Alignment:
Q  55 acaagttgataattatgttagagtatgtagtcataaagtacacaagtctttg 106  Q
    |||||||| |||||||||| ||||||| |||||||||||||||||| |||||    
T  35392829 acaagttggtaattatgtttgagtatgcagtcataaagtacacaagactttg 35392880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 35392780 - 35392813
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaaga 42  Q
    ||||||||||||||||||||||||||||||||||    
T  35392780 ctcatgtgttttaaatatatacatatatagaaga 35392813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 36723800 - 36723772
Alignment:
Q  9 ctcatgtgttttaaatatatacatatata 37  Q
    |||||||||||||||||||||||||||||    
T  36723800 ctcatgtgttttaaatatatacatatata 36723772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-40; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 40034124 - 40034006
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  40034124 ctcatgtgttttaaatatatacatatatagaagactttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 40034025  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  40034024 aattgtgtgtccataaaga 40034006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 39633342 - 39633225
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  39633342 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 39633244  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  39633243 aattgtgtgtccataaaga 39633225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 40278586 - 40278702
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  40278586 ctcatgtgttttaaatatatacatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 40278683  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  40278684 aattgtgtgtccataaaga 40278702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 42342034 - 42342151
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    |||||||||||||||||||||| |||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  42342034 actcatgtgttttaaatatataaatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttga 42342131  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  42342132 taattgtgtgtccataaaga 42342151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 19169902 - 19170019
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  19169902 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttaataattatgttagagtatgcagtcatcaagtacacaagtctttgat 19170000  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  19170001 aattgtgtgtccataaaga 19170019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 41904486 - 41904373
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  41904486 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgtagtcataaagtgcacaagtctttgat 41904388  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  41904387 aattgtgtgtccata 41904373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 42987807 - 42987690
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||| ||         |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42987807 ctcatgtgttttaaatatatacatatatagaaaactttttttt-acacaagttggtaattatgttagagtatgtagtcataaagtacacaagtctttgat 42987709  T
Q  109 aattgtgtgtccataaaga 127  Q
    ||||||||||| |||||||    
T  42987708 aattgtgtgtctataaaga 42987690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 54283849 - 54283738
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  54283849 ctcatgtgttttaaatatatacatatatagaagactttttt---acacaagtttgtaattatgttagagtatgtagtcataaagtacacaagtctttgat 54283753  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  54283752 aattgtgtgtccata 54283738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 54444872 - 54444989
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||| |||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  54444872 ctcatgtgtttcaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 54444970  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  54444971 aattgtgtgtccataaaga 54444989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 36927760 - 36927876
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  36927760 ctcatgtgttttaaatatatacatatttagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 36927857  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||    
T  36927858 aattgtgtgttcataaaga 36927876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 38035500 - 38035426
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38035500 acacaagttggtaattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 38035426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 6955996 - 6955922
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6955996 acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgataattgtgtgtccataaaga 6955922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 36076873 - 36076980
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||| |||||||||||||||||||||||||||         |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  36076873 ctcatgtattttaaatatatacatatatagaagactttttttttacacaatttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 36076972  T
Q  109 aattgtgt 116  Q
    ||||||||    
T  36076973 aattgtgt 36076980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 204635 - 204567
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtcca 121  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  204635 acacaagttgatagttatgttagagtatgcagtcataaagtacacaagtctttgataattgtgtgtcca 204567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 1565699 - 1565581
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||    
T  1565699 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagtttgtaattatgttagaatatgcagtcataaagtacacaagtctttgat 1565601  T
Q  109 a-attgtgtgtccataaaga 127  Q
    |  |||||||||||||||||    
T  1565600 attttgtgtgtccataaaga 1565581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 46614475 - 46614411
Alignment:
Q  64 taattatgttagagtatgtagtcataa-agtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  46614475 taattatgttagagtatgcagtcataagagtacacaagtctttgataattgtgtgtccataaaga 46614411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 34017316 - 34017202
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgtta-gagtatgtagtcataaagtacacaagtctttga 107  Q
    |||||||||||||||||||||||||||||||| ||         |||||||||| ||||||||||| ||||||| ||||||||||||||||| || ||||    
T  34017316 ctcatgtgttttaaatatatacatatatagaaaactttttttt-acacaagttggtaattatgttaagagtatgcagtcataaagtacacaaatcgttga 34017218  T
Q  108 taattgtgtgtccata 123  Q
    |||||||||| |||||    
T  34017217 taattgtgtgcccata 34017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 38392366 - 38392478
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||| ||||||||||||||||||||||          || ||||||| |||||||||||||||||| |||||||| ||||||||||||||||     
T  38392366 ctcatgtgtttgaaatatatacatatatagaaga-atttttcttacgcaagttggtaattatgttagagtatgcagtcataa-gtacacaagtctttgaa 38392463  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  38392464 aattgtgtgtccata 38392478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 19538192 - 19538126
Alignment:
Q  57 aagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccata 123  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  19538192 aagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgaatattgtgtgtccata 19538126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 220528 - 220453
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataa-agtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||| ||||||||    
T  220528 acacaagttggtaattatgttagactatgcagtcataagagtacacaagtctttgataattatgtgttcataaaga 220453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 38035547 - 38035515
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaag 41  Q
    |||||||||||||||||||||||||||||||||    
T  38035547 ctcatgtgttttaaatatatacatatatagaag 38035515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 52647835 - 52647804
Alignment:
Q  92 gtacacaagtctttgataattgtgtgtccata 123  Q
    ||||||||||||||||||||||||||| ||||    
T  52647835 gtacacaagtctttgataattgtgtgttcata 52647804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 6e-38; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 4000376 - 4000262
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4000376 ctcatgtgttttaaatatatacatatatagaagactttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 4000277  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  4000276 aattgtgtgtccata 4000262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 13968580 - 13968462
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  13968580 actcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttga 13968482  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  13968481 taattgtgtgtccataaaga 13968462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 25752046 - 25752159
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  25752046 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 25752144  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  25752145 aattgtgtgtccata 25752159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 36498807 - 36498920
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  36498807 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 36498905  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  36498906 aattgtgtgtccata 36498920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 5380765 - 5380879
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  5380765 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 5380863  T
Q  109 aattgtgtgtccataa 124  Q
    |||| |||||||||||    
T  5380864 aattatgtgtccataa 5380879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 10623250 - 10623137
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  10623250 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaatcatgttagagtatgcagtcataaagtacacaagtctttgat 10623152  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  10623151 aattgtgtgtccata 10623137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 38090666 - 38090782
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||    
T  38090666 ctcatgtgttttaaatatatacatatttagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcaaaaagtacacaagtctttgat 38090763  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  38090764 aattgtgtgtccataaaga 38090782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 40988698 - 40988583
Alignment:
Q  10 tcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgata 109  Q
    ||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  40988698 tcatgtgttttaaatatatacatatttagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgata 40988601  T
Q  110 attgtgtgtccataaaga 127  Q
    | ||||||||||||||||    
T  40988600 aatgtgtgtccataaaga 40988583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 746679 - 746795
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  746679 ctcatgtgttttaaatatatacatatttagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 746776  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||| ||||| ||||    
T  746777 aattgtgtatccatgaaga 746795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 2745280 - 2745171
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  2745280 ctcatgtgttttaaatacatacatatatagaagactttttttt-acacaagttgataattatgttagagtattcagtcataaagtacacaagtctttgat 2745182  T
Q  109 aattgtgtgtc 119  Q
    |||||||||||    
T  2745181 aattgtgtgtc 2745171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 26394665 - 26394549
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||| ||         |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  26394665 ctcatgtgttttaaatatatacatatttagaaaacttttttt--acacaagttggtaattatgttagagtatgcactcataaagtacacaagtctttgat 26394568  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  26394567 aattgtgtgtccataaaga 26394549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 39047641 - 39047757
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  39047641 ctcatgtgttttaaatatatacatatatagaa-actttttttt-acacaagttgataattatgttagagtatgcggttataaagtacacaagtctttgat 39047738  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  39047739 aattgtgtgtccataaaga 39047757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 29235799 - 29235911
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||            ||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  29235799 ctcatgtgttttaaatatatacatatatagaat--tttttttttacataagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 29235896  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  29235897 aattgtgtgtccata 29235911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 27500687 - 27500574
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||| |||||| ||||||||||| || ||| |||||||    
T  27500687 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttaaagtatgcagtcataaagtgcataagcctttgat 27500589  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  27500588 aattgtgtgtccata 27500574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 729865 - 729746
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnn-acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    |||||||||||||||||||||||||||||||| ||          |||||| ||| ||||||||||| |||||| | ||||||||||||||||| |||||    
T  729865 ctcatgtgttttaaatatatacatatatagaatacttttttttttacacaaattggtaattatgttaaagtatgcattcataaagtacacaagtttttga 729766  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  729765 taattgtgtgtccataaaga 729746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 33159203 - 33159271
Alignment:
Q  59 gttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  33159203 gttggtaattatgttagagtatgcagtcataaagtacacaagtctttgataattgtgtgtccttaaaga 33159271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 29835844 - 29835748
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttg 106  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  29835844 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagactttg 29835748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 25525738 - 25525618
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttg--ataattatgttagagtatgtagtcataa-agtacacaagtcttt 105  Q
    ||||||||||||||| |||||| ||||||||||||         ||||||||||  ||||||||||||||||||| | |||||| |||||||||||||||    
T  25525738 ctcatgtgttttaaacatatacgtatatagaagactttttttt-acacaagttggtataattatgttagagtatgcaatcataagagtacacaagtcttt 25525640  T
Q  106 gataattgtgtgtccataaaga 127  Q
    ||||||| ||||||||||||||    
T  25525639 gataattatgtgtccataaaga 25525618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 6e-38; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 17754148 - 17754266
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  17754148 ctcatgtgttttaaatatatacatatatagaagactttttttttacacaagttggtaattatgttagaatatgtagtcataaagtacacaattctttgat 17754247  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  17754248 aattgtgtgtccataaaga 17754266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 19055468 - 19055586
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  19055468 ctcatgtgttttaaatatatacatatatagaagactttttttttacacaagttggtaattatgttagaatatgtagtcataaagtacacaattctttgat 19055567  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  19055568 aattgtgtgtccataaaga 19055586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 3021402 - 3021519
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  3021402 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 3021500  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  3021501 aattgtgtgtccataaaga 3021519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 33981736 - 33981849
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33981736 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttgataattatgttagagtatgcagtcataaagtacacaagtctttgat 33981834  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  33981835 aattgtgtgtccata 33981849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 1587169 - 1587287
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| ||||          |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  1587169 ctcatgtgttttaaatatatacatatatataagaatttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 1587268  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  1587269 aattgtgtgtccataaaga 1587287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 23336358 - 23336475
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  23336358 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatggagtcataaagtacacaagtctttgat 23336456  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||| ||||||||||    
T  23336457 aattgtgtttccataaaga 23336475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 33237092 - 33237208
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||| ||||||||||||||||||||| ||||||||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33237092 ctcaagtgttttaaatatatacatatttagaagacttttttt--acacaagttgataattatgttagagtatgcagtcataaagtacacaagtctttgat 33237189  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  33237190 aattgtgtgtccataaaga 33237208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 3937908 - 3938020
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| |||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  3937908 ctcatgtgttttaaatatatacatatatataagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 3938005  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  3938006 aattgtgtgtccata 3938020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 29492339 - 29492456
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| |||||         |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  29492339 ctcatgtgttttaaatatatacatatataaaagactttttttt-acacgagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 29492437  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  29492438 aattgtgtgtccataaaga 29492456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 40278453 - 40278569
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||  |||||||||||||| |||||||||||    
T  40278453 ctcatgtgttttaaatatatacatatatagaagacttttttt--acacaagttggtaattatgttagagtatacagtcataaagtacagaagtctttgat 40278550  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  40278551 aattgtgtgtccataaaga 40278569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 43354139 - 43354256
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  43354139 ctcatgtgttttaaatatatacatatatagaagactttttttt-acaaaagttggtaattatgttagaatatgcagtcataaagtacacaagtctttgat 43354237  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  43354238 aattgtgtgtccataaaga 43354256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 21576881 - 21576989
Alignment:
Q  14 gtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattg 113  Q
    ||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21576881 gtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgataattg 21576979  T
Q  114 tgtgtccata 123  Q
    ||||||||||    
T  21576980 tgtgtccata 21576989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 13268776 - 13268889
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||    
T  13268776 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttaaagtatgcattcataaagtacacaagtctttgat 13268874  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  13268875 aattgtgtgtccata 13268889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 33778262 - 33778188
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33778262 acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgataattgtgtgtccataaaga 33778188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 45149167 - 45149239
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaa 125  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45149167 acacaagtcggtaattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaa 45149239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 27655584 - 27655701
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         || ||||||| |||||||||||||||||| | ||| ||||||||||||||||||||    
T  27655584 ctcatgtgttttaaatatatacatatatagaagactttttttt-acgcaagttggtaattatgttagagtatgcaatcaaaaagtacacaagtctttgat 27655682  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||| ||||||    
T  27655683 aattgtgtgtccgtaaaga 27655701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 45970501 - 45970384
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         | ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  45970501 ctcatgtgttttaaatatatacatatatagaagactttgtttt-atacaagttgataattatgtttgagtatgcagtcataaagtgcacaagtctttgat 45970403  T
Q  109 aattgtgtgtccataaaga 127  Q
    || ||||||| ||||||||    
T  45970402 aactgtgtgttcataaaga 45970384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 49316378 - 49316490
Alignment:
Q  10 tcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgata 109  Q
    ||||||||||||||| ||||||||||||||||||         |||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||    
T  49316378 tcatgtgttttaaatgtatacatatatagaagactttttttt-acacaagttggtaattatgttaaagtatgcagtcataaagtacacaaatctttgata 49316476  T
Q  110 attgtgtgtccata 123  Q
    ||||||||||||||    
T  49316477 attgtgtgtccata 49316490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 22847626 - 22847554
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaa 125  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  22847626 acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtatttgataattgtgtgtccataaa 22847554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 53082402 - 53082330
Alignment:
Q  55 acaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  53082402 acaagttgataattatgttagagtatgcagtcataaagtacacaagtttttgataattgtgcgtccataaaga 53082330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 43914470 - 43914355
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||  ||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  43914470 ctcatgtgttttaaatatatacatata--gaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtatttgat 43914374  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||| ||||||||||    
T  43914373 aattgtgtatccataaaga 43914355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 37089838 - 37089912
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||||    
T  37089838 acacaagttggtaattatgttagagtatgcaatcataaagtatacaagtctttgataattgtgtatccataaaga 37089912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 33778371 - 33778288
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagt 93  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||    
T  33778371 ctcatgtgttttaaatatatacatatatagaagac-ttttttttacacaagttggtaattatgttagagtatgcagtcataaagt 33778288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 38667479 - 38667532
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttg 106  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  38667479 acacaagttggtaattatgttagagtatgcagtcataaagtacacaagactttg 38667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 4070276 - 4070201
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagac-nnnnnnnnnacacaagttgataattatgttagagtatgta 83  Q
    |||||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||||    
T  4070276 ctcatgtgttttaaatatatacatatatagaagacttttttttttacacaagttggtaattatgttagagtatgta 4070201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 14899165 - 14899131
Alignment:
Q  89 aaagtacacaagtctttgataattgtgtgtccata 123  Q
    ||||||||||||||||||||||||||||| |||||    
T  14899165 aaagtacacaagtctttgataattgtgtgcccata 14899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 6e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 18060275 - 18060157
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  18060275 ctcatgtgttttaaatatatacatatatagaagaccttttttttacataagttggtaattatgttagagtatgtagtcataaagtaaacaagtctttgat 18060176  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  18060175 aattgtgtgtccataaaga 18060157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 5438358 - 5438476
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  5438358 ctcatgtgttttaaatatatacatatatagaagattttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 5438457  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||| ||||||||||||||    
T  5438458 aattttgtgtccataaaga 5438476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 28587153 - 28587271
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  28587153 ctcatgtgttttaaatatatacatatgtagaagactttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacaaaagtctttgat 28587252  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  28587253 aattgtgtgtccataaaga 28587271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 28636953 - 28636837
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28636953 ctcatgtgttttaaatatatacttatatagaagacttttttt--acacaagttgataattatgttagagtatgcagtcataaagtacacaagtctttgat 28636856  T
Q  109 aattgtgtgtccataaaga 127  Q
    ||||||||||| |||||||    
T  28636855 aattgtgtgtctataaaga 28636837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 43207190 - 43207306
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  43207190 ctcatgtgttttaaatatatacatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 43207287  T
Q  109 aattgtgtgtccataaaga 127  Q
     ||||||||||||||||||    
T  43207288 gattgtgtgtccataaaga 43207306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 41726872 - 41726755
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  41726872 ctcatgtgttttaaatatatacatatatagaaga-attttttttacacaagttggtaattatgttagagcatgcagtcataaagtacacaagtctttgat 41726774  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  41726773 aattgtgtgtccataaaga 41726755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 27482052 - 27481936
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27482052 ctcatgtgttttaaatatatacacatatagaagacttttttt--acacaagttgataattatgttagagtatccagtcataaagtacacaagtctttgat 27481955  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||    
T  27481954 aattgtgtgtgcataaaga 27481936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 28150469 - 28150585
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||| |||||||||||||         ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  28150469 ctcatgtgttttaaatatataaatatatagaagactttttttt-acacaagttgataattatgttagagtatgcaatcataaagtacacaaatctttgat 28150567  T
Q  109 aattgtgtgtccataaag 126  Q
    ||||||||||||||||||    
T  28150568 aattgtgtgtccataaag 28150585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 17540140 - 17540028
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  17540140 ctcatgtgttttaaatatatacatatatagaagactttttt---acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtcgttgat 17540044  T
Q  109 aattgtgtgtccataa 124  Q
    ||||||||| ||||||    
T  17540043 aattgtgtgcccataa 17540028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 10574855 - 10574738
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||| || |||||||||||||||| |||||||||    
T  10574855 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtttgcagtcataaagtacacaggtctttgat 10574757  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||    
T  10574756 aattgtgtgttcataaaga 10574738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 29366138 - 29366251
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  29366138 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttgataattatgttagagtatgccgtcataaagtacacaagtcgttgat 29366236  T
Q  109 aattgtgtgtccata 123  Q
    ||||||||| |||||    
T  29366237 aattgtgtgcccata 29366251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 41286934 - 41287008
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  41286934 acacaagttggtaattatgttagagtatgctgtcataaagtacacaagtctttgataattgtgtgtccataaaga 41287008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 45159927 - 45160040
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||| ||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  45159927 ctcatgtgttttaaatatattcatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtcgttgat 45160025  T
Q  109 aattgtgtgtccata 123  Q
    ||||||||| |||||    
T  45160026 aattgtgtgcccata 45160040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 6082067 - 6081981
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtaca 96  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||    
T  6082067 ctcatgtgttttaaatatatacatatatagaagacattttttt-acacaagttggtaattatgttagagtatgcagtcataaagtaca 6081981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 4e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 41392871 - 41392986
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  41392871 ctcatgtgttttaaatatatacatatatagaagaccttttttt-acacaagttggtaattatgttagagtatgtagtcataaagtatacaagtctttgat 41392969  T
Q  109 aattgtgtgtccataaa 125  Q
    |||||||||||||||||    
T  41392970 aattgtgtgtccataaa 41392986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 12764423 - 12764541
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||| |||||||||         ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12764423 ctcatgtgttttaaatatatacatacatagaagactttttttttacacaggctgataattatgttagagtatgcagtcataaagtacacaagtctttgat 12764522  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  12764523 aattgtgtgtccataaaga 12764541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 1143501 - 1143384
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  1143501 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagaatatgcagtcataaagtacacaagtctttgat 1143403  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  1143402 aattgtgtgtccataaaga 1143384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 39584397 - 39584280
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||    
T  39584397 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaaatctttgat 39584299  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  39584298 aattgtgtgtccataaaga 39584280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 44671593 - 44671710
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  44671593 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagttgataattatgttagagtatgcagtcataaagtatacaagtttttgat 44671691  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  44671692 aattgtgtgtccataaaga 44671710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 44868896 - 44868782
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  44868896 ctcatgtgttttaaatatatacatatatagaagactttttttttatacaagttggtaattatgttatagtatgtagtcataaagtacacaagtctttgat 44868797  T
Q  109 aattgtgtgtccata 123  Q
    |||||||| ||||||    
T  44868796 aattgtgtctccata 44868782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 3178123 - 3178236
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  3178123 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacagaagtctttgat 3178221  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  3178222 aattgtgtgtccata 3178236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 41575259 - 41575373
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  41575259 ctcatgtgttttaaatatatacatatttagaagacttttttt--acacaagttgttaattatgttagagtatgcagtcataaagtacacaagtcattgat 41575356  T
Q  109 aattgtgtgtccataaa 125  Q
    |||||||||||||||||    
T  41575357 aattgtgtgtccataaa 41575373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 37262091 - 37262207
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||| |||||||||||||||||||||||||||||         || ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  37262091 ctcatatgttttaaatatatacatatatagaagacttttttt--actcaagttggtaattatgttggagtatgcagtcataaagtacacaagtctttgat 37262188  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  37262189 aattgtgtgtccataaaga 37262207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 38256747 - 38256860
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||    
T  38256747 ctcatgtgttttaaatatatacatatatagaagactctttttt-acacaagttggtaattatgttagagtatgcagtcataaaatacacacgtctttgat 38256845  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  38256846 aattgtgtgtccata 38256860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 41543023 - 41542906
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||    
T  41543023 ctcatgtgttttaaatatatacatatatagaagactttatttt-acacaagttggtaattctgttagagtatgcagtcataaagtacaaaagtctttgat 41542925  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||| ||||||||||    
T  41542924 aattgtgtatccataaaga 41542906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 31204213 - 31204327
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||| |||||||||||||||||||||         |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  31204213 ctcatgtgttttacatatatacatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcaatcataaagtacacaagtctttgat 31204310  T
Q  109 aattgtgtgtccataaa 125  Q
    ||||||| |||||||||    
T  31204311 aattgtgcgtccataaa 31204327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 34055383 - 34055499
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  34055383 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagttggtaattatgttagagtatgcagtcataaagt-cacaagtctttgat 34055480  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||    
T  34055481 aattgtgtgttcataaaga 34055499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 4484993 - 4484919
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  4484993 acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtgtttgataattgtgtgtccataaaga 4484919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 30728883 - 30728766
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||| |||||||||||||||||||||||         || ||||||| |||||||||||||| ||| |||||||||||||||||||||||||     
T  30728883 ctcatgtgtttgaaatatatacatatatagaagactttttctt-acgcaagttggtaattatgttagagaatgcagtcataaagtacacaagtctttgaa 30728785  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  30728784 aattgtgtgtccataaaga 30728766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 42994305 - 42994192
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||  ||| |||||||||||||||||  ||||||||| ||||||||||||||||    
T  42994305 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacactttggtaattatgttagagtatacagtcataaaatacacaagtctttgat 42994207  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  42994206 aattgtgtgtccata 42994192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 42355856 - 42355952
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttg 106  Q
    |||||||||||||||||||||||||||| ||||||         |||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  42355856 ctcatgtgttttaaatatatacatatattgaagactttttttc-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagactttg 42355952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-35; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 38450147 - 38450265
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  38450147 actcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttga 38450245  T
Q  108 taattgtgtgtccataaaga 127  Q
    |||||||||||| |||||||    
T  38450246 taattgtgtgtcaataaaga 38450265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 40259905 - 40260023
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  40259905 ctcatgtgttttaaatatatacatatttagaagacttttttttaacacaagttggtaattatgttagagtatacagtcataaagtacacaagtctttgat 40260004  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  40260005 aattgtgtgtccataaaga 40260023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 37710885 - 37710997
Alignment:
Q  11 catgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataa 110  Q
    ||||||||||||||||||||||||||| |||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  37710885 catgtgttttaaatatatacatatataaaagactttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgataa 37710984  T
Q  111 ttgtgtgtccata 123  Q
    |||||||||||||    
T  37710985 ttgtgtgtccata 37710997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 28295040 - 28294921
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnn-acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttga 107  Q
    ||||||||||||||||||||||||||||| |||||          |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  28295040 ctcatgtgttttaaatatatacatatataaaagacctttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttga 28294941  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  28294940 taattgtgtgtccataaaga 28294921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 28293710 - 28293827
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  28293710 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagttggtaattatgttagagtatgcggtcataaagtacacaagtctttgat 28293808  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  28293809 aattgtgtgtccataaaga 28293827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 35668280 - 35668167
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  35668280 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttgataattatgttagagtatgcagtcataaagtacacaagtcgttgat 35668182  T
Q  109 aattgtgtgtccata 123  Q
    ||||||||| |||||    
T  35668181 aattgtgtgcccata 35668167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 8296567 - 8296677
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||    
T  8296567 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagggtatgcagtcataaagtacacaagtctttgat 8296665  T
Q  109 aattgtgtgtcc 120  Q
    ||||||||||||    
T  8296666 aattgtgtgtcc 8296677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 19071951 - 19071841
Alignment:
Q  12 atgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataat 111  Q
    ||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  19071951 atgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacagaagtctttgataat 19071853  T
Q  112 tgtgtgtccata 123  Q
    ||||||||||||    
T  19071852 tgtgtgtccata 19071841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 14313236 - 14313353
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| |||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  14313236 ctcatgtgttttaaatatatacatatataaaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 14313334  T
Q  109 aattgtgtgtccataaaga 127  Q
    ||||| |||| ||||||||    
T  14313335 aattgggtgttcataaaga 14313353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 35434720 - 35434837
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||    
T  35434720 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaaatacacaaatctttgat 35434818  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||    
T  35434819 aattgtgtgtgcataaaga 35434837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 38184515 - 38184628
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  38184515 ctcatgtgttttaaatatatacatatatagaagacttttcttt-acacaagttggtaattatgttacagtatgcagtcataaagtacacaagtctttgat 38184613  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||| ||||    
T  38184614 aattgtgtgttcata 38184628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 12231458 - 12231573
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  12231458 ctcatgtgttttaaatatatacatatatagaagattttttttttacacaagttggtaatcatgttagagtatgca-tcataaagtacacaagtctttgat 12231556  T
Q  109 aattgtgtgtccataaa 125  Q
    |||||||||||||||||    
T  12231557 aattgtgtgtccataaa 12231573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 48343909 - 48344017
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||  ||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  48343909 ctcatgtgttttaaatatatacatatata--agactttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 48344006  T
Q  109 aattgtgtgtc 119  Q
    |||||||||||    
T  48344007 aattgtgtgtc 48344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 4236465 - 4236582
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataa-agtacacaagtctttga 107  Q
    ||||||||||||||||||| |||||||||||||||         |||||||||| |||||||||||||||||| | |||||| |||||||||||||||||    
T  4236465 ctcatgtgttttaaatatagacatatatagaagacttttttt--acacaagttggtaattatgttagagtatgcattcataagagtacacaagtctttga 4236562  T
Q  108 taattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||    
T  4236563 taattgtgtgtccataaaga 4236582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 33210602 - 33210719
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||| ||||||||||||||||||||||||         |||||||||| ||||||||||||||||||  |||||||||||||||||| ||| ||    
T  33210602 ctcatgtgttctaaatatatacatatatagaagacttattttt-acacaagttggtaattatgttagagtatgcggtcataaagtacacaagttttttat 33210700  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  33210701 aattgtgtgtccataaaga 33210719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 28311974 - 28311906
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtcca 121  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28311974 acacaagttgatagttatgttagagtatgcagtcataaagtacacaagtctttgataattgtgtgtcca 28311906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 34345678 - 34345604
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  34345678 acacaagttggtaattatgttagagtatggattcataaagtacacaagtcttcgataattgtgtgtccataaaga 34345604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 39880352 - 39880463
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||| ||||| ||||||| |||||||  ||||||||| ||||||||||||||||||    
T  39880352 ctcatgtgttttaaatatatacatatatagaagacgttttttt-acacgagttggtaattatattagagt--gtagtcatatagtacacaagtctttgat 39880448  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  39880449 aattgtgtgtccata 39880463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 16083380 - 16083454
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||    
T  16083380 acacaagttggtaattatgttagagtatgcactcataaaatacacaagtctttgataattgtgtgtccatgaaga 16083454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 21366582 - 21366694
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||| ||||||||||||||||     |||||    
T  21366582 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacaca-----ttgat 21366675  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||| ||||||||    
T  21366676 aattgtgtgtgcataaaga 21366694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 39767219 - 39767272
Alignment:
Q  74 agagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  39767219 agagtatgcagttataaagtacacaagtctttgataattgtgtgtccataaaga 39767272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 16083325 - 16083356
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaa 40  Q
    ||||||||||||||||||||||||||||||||    
T  16083325 ctcatgtgttttaaatatatacatatatagaa 16083356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 39767166 - 39767197
Alignment:
Q  12 atgtgttttaaatatatacatatatagaagac 43  Q
    ||||||||||||||||||||||||||||||||    
T  39767166 atgtgttttaaatatatacatatatagaagac 39767197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 5811 - 5694
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5811 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttgatagttatgttagagtatgcagtcataaagtacacaagtctttgat 5713  T
Q  109 aattgtgtgtccataaaga 127  Q
    ||||||||||| |||||||    
T  5712 aattgtgtgtctataaaga 5694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 3e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 32596986 - 32596865
Alignment:
Q  8 actcatgtgttttaaatatatacatatatagaagacnnnnnnnnn--acacaagttgataattatgttagagtatgtagtcataaagtacacaagtcttt 105  Q
    ||||||||||||||||||||||||| ||||||||||           |||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  32596986 actcatgtgttttaaatatatacatgtatagaagactttttttttttacacaagttggtaattatgttagagtatgcagtcataaagtacacaagtcttt 32596887  T
Q  106 gataattgtgtgtccataaaga 127  Q
    ||||||||||||||||||||||    
T  32596886 gataattgtgtgtccataaaga 32596865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 11641354 - 11641238
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  11641354 ctcatgtgttttaaatatatacatatatagaagactttttttt-acacaagttggtaattatgt-agagtatgcagtcataaagtacacaagtctttgat 11641257  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  11641256 aattgtgtgtccataaaga 11641238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 1798853 - 1798968
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||| ||||||||||||||||||||| |||||         |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  1798853 ctcatgtattttaaatatatacatatatataagactttttttt-acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgat 1798951  T
Q  109 aattgtgtgtccataaa 125  Q
    |||||||||||||||||    
T  1798952 aattgtgtgtccataaa 1798968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 15192129 - 15192242
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||    
T  15192129 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagttggtaattatgttagagtatggagtcataaagtacacaagtctttaat 15192227  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  15192228 aattgtgtgtccata 15192242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 15468422 - 15468309
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||    
T  15468422 ctcatgtgttttaaatatatacatatatagaaga-tttttttttacacaagttggtaattatgttagagtatggagtcataaagtacacaagtctttaat 15468324  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  15468323 aattgtgtgtccata 15468309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 16894753 - 16894866
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  16894753 ctcatgtgttttaaatatatacatatttagaagactttttttt-acacaagttggtaattatgttagagtatgcaatcataaagtacacaagtctttgat 16894851  T
Q  109 aattgtgtgtccata 123  Q
    |||||||||||||||    
T  16894852 aattgtgtgtccata 16894866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 29723678 - 29723796
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||| |||         ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  29723678 ctcatgtgttttaaatatatacatatatagaggactttttttt-acagaagttgataattatgttagagtatgcagtcataaagtacacaaatctttgat 29723776  T
Q  109 aattgtg-tgtccataaaga 127  Q
    ||||||| ||||||||||||    
T  29723777 aattgtgttgtccataaaga 29723796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 8590448 - 8590332
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataa-agtacacaagtctttga 107  Q
    ||||| |||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||  |||||||| |||||||||||||||||    
T  8590448 ctcatatgttttaaatatatacatatatagaagacattttttt-acacaagttggtaattatgttagagtatccagtcataagagtacacaagtctttga 8590350  T
Q  108 taattgtgtgtccataaa 125  Q
    ||||||| ||||||||||    
T  8590349 taattgtttgtccataaa 8590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 26582954 - 26582839
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||| ||||          |||||||||| ||||||||| ||| |||| || |||||||||||||||||||||||    
T  26582954 ctcatgtgttttaaatatatacatatataaaaga--ttttttttacacaagttggtaattatgt-agattatgcagccataaagtacacaagtctttgat 26582858  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  26582857 aattgtgtgtccataaaga 26582839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 12509 - 12583
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccataaaga 127  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12509 acacaagttggtaattatgttagagtatgcagtcataaagtacacaagtctttgataattgtgtgtccataaaga 12583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 16370 - 16253
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||| ||||||||||||||||||||||         |||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||    
T  16370 ctcatgtgttttgaatatatacatatatagaagactttttttt-acacaagttggtaattatgttagagtaggcagtcataaagtacacaagtttttgat 16272  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  16271 aattgtgtgtccataaaga 16253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 42005 - 41888
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    ||||||||||||||||||||||||||||||||| |         |||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||    
T  42005 ctcatgtgttttaaatatatacatatatagaaggctttttttt-acacaagttggtaattatgttagactatgcagtcataaagtacacaagtcgttgat 41907  T
Q  109 aattgtgtgtccataaaga 127  Q
    |||||||||||||||||||    
T  41906 aattgtgtgtccataaaga 41888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 1252 - 1182
Alignment:
Q  53 acacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgataattgtgtgtccata 123  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  1252 acacaagttggtaattatgttagaatatgcagtcataaagtacacaagtctttgataattgtgtgtccata 1182  T

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Target: scaffold0004 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 131225 - 131338
Alignment:
Q  9 ctcatgtgttttaaatatatacatatatagaagacnnnnnnnnnacacaagttgataattatgttagagtatgtagtcataaagtacacaagtctttgat 108  Q
    |||||||||||||||||||| ||||||||||||||         |||||||||| ||||||| |||||||||| ||||||||||||||||||| ||| ||    
T  131225 ctcatgtgttttaaatatatgcatatatagaagactttgtttt-acacaagttggtaattatattagagtatgcagtcataaagtacacaagttttttat 131323  T
Q  109 aattgtgtgtccata 123  Q
    ||||||||| |||||    
T  131324 aattgtgtgcccata 131338  T

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