View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5848-33 (Length: 127)
Name: Solexa-NF5848-33
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-33 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (9 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 39403983 - 39404104
Alignment:
| Q |
6 |
cagcttcctctatgagggcttccacttcagcaaatgtggctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39403983 |
cagcttcctctatgagggcttccacttcagcaaatgtggctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgt |
39404082 |
T |
|
| Q |
106 |
agggctatagctcaaatccctg |
127 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39404083 |
ggggctatagctcaaatccctg |
39404104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-32; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 12064535 - 12064629
Alignment:
| Q |
33 |
cagcaaatgtggctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccctg |
127 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12064535 |
cagcatatgtggctgcctcttgtgaagacagggacattatcattgctaattctaagtctaactcagactgtgtagggttatagctcaaatccctg |
12064629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 15651605 - 15651517
Alignment:
| Q |
38 |
aatgtggctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccct |
126 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15651605 |
aatgtggctgcctcttgtgcagacaaggacattatcatcgcgaattctaagtctaacttagactgtgtagggctatagctcaaatccct |
15651517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 15627838 - 15627750
Alignment:
| Q |
38 |
aatgtggctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccct |
126 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15627838 |
aatgtggctgcctcttgtgcagacaaggacattatcatcacgaattctaagtctaacttagactgtgtagggctatagctcaaatccct |
15627750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 15616376 - 15616334
Alignment:
| Q |
39 |
atgtggctgcctcttgtgcagacacggacattatcattgctaa |
81 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15616376 |
atgtggctgcctcttgtgcaggcacggacattatcattgctaa |
15616334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 15608025 - 15607981
Alignment:
| Q |
37 |
aaatgtggctgcctcttgtgcagacacggacattatcattgctaa |
81 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
15608025 |
aaatgtggctgcctcttgtgcaggcagggacattatcattgctaa |
15607981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 15639541 - 15639499
Alignment:
| Q |
39 |
atgtggctgcctcttgtgcagacacggacattatcattgctaa |
81 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
15639541 |
atgtggctgcctcttgtgcaggcagggacattatcattgctaa |
15639499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 15607977 - 15607948
Alignment:
| Q |
97 |
agactgtgtagggctatagctcaaatccct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15607977 |
agactgtgtagggctatagctcaaatccct |
15607948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 15616330 - 15616301
Alignment:
| Q |
97 |
agactgtgtagggctatagctcaaatccct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15616330 |
agactgtgtagggctatagctcaaatccct |
15616301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 15639495 - 15639466
Alignment:
| Q |
97 |
agactgtgtagggctatagctcaaatccct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15639495 |
agactgtgtagggctatagctcaaatccct |
15639466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University