View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-34 (Length: 127)
Name: Solexa-NF5848-34
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-34 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 20975 - 20856
Alignment:
| Q |
8 |
aatggtggaccgcaaaaacaacctttttgccacgagacttccaatcttctgaactactagcaactttcattgcctgagcaagggaatcatccagttcttt |
107 |
Q |
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| T |
20975 |
aatggtggaccgcaaaaacaacctttttgccacgagacttccaatcttctgaactactagcaactttcattgcctgagaaagggaatcatccagttcttt |
20876 |
T |
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| Q |
108 |
gaattgtacaagatgcttca |
127 |
Q |
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|||||||||||||||||||| |
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| T |
20875 |
gaattgtacaagatgcttca |
20856 |
T |
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