View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-40 (Length: 122)
Name: Solexa-NF5848-40
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 11178405 - 11178523
Alignment:
| Q |
7 |
tatgtgacagtgtacgttc---atagaatttcaattttattaattaacatcataaaccatgctatatcttttctttattatcctacaatgcaacaaaaat |
103 |
Q |
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| T |
11178405 |
tatgtgacaatgtacgttcttcatagaatttcaattttattaattaacatcataaaccatgatatatattttctttattatcctacaatgcaacaaaaat |
11178504 |
T |
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| Q |
104 |
tgcagtcaaatggtcctac |
122 |
Q |
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| T |
11178505 |
tgcaggcaaatggtcctac |
11178523 |
T |
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