View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-48 (Length: 100)
Name: Solexa-NF5848-48
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-48 |
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| [»] scaffold0189 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 45; Significance: 6e-18; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 45; E-Value: 6e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20612 - 20564
Alignment:
| Q |
1 |
acagcagtacatcctacaaaataacacaaatgaccattaaaataaataa |
49 |
Q |
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| T |
20612 |
acagcagtacatcctgcaaaataacacaaatgaccattaaaataaataa |
20564 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 31002385 - 31002418
Alignment:
| Q |
67 |
atagtgtgaatgaaaagtatccagatggaggatc |
100 |
Q |
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| T |
31002385 |
atagtgtgaatgaaaagtatccagatggaggatc |
31002418 |
T |
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