View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-5 (Length: 160)
Name: Solexa-NF5848-5
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 8e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 8437558 - 8437417
Alignment:
| Q |
6 |
caatatatttccttgagaacaaaactaaactgttacacgcttcagcatacgccctctgccctccacacacttcactaagttataactaatgtaaaaagtt |
105 |
Q |
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| T |
8437558 |
caatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacacttca-----------ctaatgtaaaaagtt |
8437470 |
T |
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| Q |
106 |
annnnnnnngcttattatagtgtgtacatgtttatatcttcattttgacaagatc |
160 |
Q |
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| T |
8437469 |
a--ttttttgcttattatagtgtgtacatgtttatattttcattttgacaagatc |
8437417 |
T |
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