View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-50 (Length: 94)
Name: Solexa-NF5848-50
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-50 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 14656085 - 14655992
Alignment:
| Q |
1 |
ttttgacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcagaaccaaacatactcta |
94 |
Q |
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| T |
14656085 |
tttttacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagagtggaaccaaatattgcagaaccaaaaatactcta |
14655992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 16102814 - 16102721
Alignment:
| Q |
1 |
ttttgacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcagaaccaaacatactcta |
94 |
Q |
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| T |
16102814 |
ttttgacctacttaaccatattaaacacaaaatttactatctttgaaacaatttcaagaatggaaccaactattgcagaaccaaaattactcta |
16102721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27004740 - 27004663
Alignment:
| Q |
1 |
ttttgacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcag |
78 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
27004740 |
ttttgacctacttgaccatattaaacgcacaatttactatctttgaaacaatttcaaaagtggaaccaactattgcag |
27004663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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