View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-56 (Length: 75)
Name: Solexa-NF5848-56
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-56 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 41448360 - 41448428
Alignment:
| Q |
7 |
ataaatccctacatttaaaaccacagtttcaataatactatgttactatgttagtaattagttatgatt |
75 |
Q |
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| T |
41448360 |
ataaatccctacatttaaaaccacagtttcaataatactatgttactatgttagtaattagttatgatt |
41448428 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 41458707 - 41458767
Alignment:
| Q |
15 |
ctacatttaaaaccacagtttcaataatactatgttactatgttagtaattagttatgatt |
75 |
Q |
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| T |
41458707 |
ctacatttaaaaccacagtttcagtaatactatgttactatgttagtaattagttatgatt |
41458767 |
T |
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