View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-60 (Length: 62)
Name: Solexa-NF5848-60
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-60 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 51; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 40739219 - 40739165
Alignment:
| Q |
8 |
gttggatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
62 |
Q |
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| T |
40739219 |
gttgaatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
40739165 |
T |
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Target: chr2 (Bit Score: 51; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 3604394 - 3604448
Alignment:
| Q |
8 |
gttggatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
62 |
Q |
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| T |
3604394 |
gttgaatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
3604448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 29466424 - 29466370
Alignment:
| Q |
8 |
gttggatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
62 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29466424 |
gttgaatgacttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
29466370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 7989116 - 7989170
Alignment:
| Q |
8 |
gttggatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
62 |
Q |
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| T |
7989116 |
gttgaatgatttagggatttgctgcaataacatgatgaaggaagaagcaaagatc |
7989170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 6242111 - 6242165
Alignment:
| Q |
8 |
gttggatgatttagggatttgctgcaaaaacatgatgaaggaagaagcaaagatc |
62 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6242111 |
gttgaatgatttagggatttgctgcaaaaacatgacgaaggaagaagcaaagatc |
6242165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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