View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5848-7 (Length: 155)
Name: Solexa-NF5848-7
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5848-7 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 51485379 - 51485230
Alignment:
| Q |
5 |
caagatatacatacatactgactgagcgagcatcagactagccagtcctctatatacagtagcaatcggctgccaaatacagttcaaactattcttacca |
104 |
Q |
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| T |
51485379 |
caagatatacatacatactgactgagcgagcatcagactagccagtcctctatatgcagcagcaatcggctgccaaatacagttcaaactattcttacca |
51485280 |
T |
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| Q |
105 |
accaatgactttttggattggtatctatatctataatgaatttcctttct |
154 |
Q |
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| T |
51485279 |
accaatgactttttggactggtatctatatctataatgaatttcctttct |
51485230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 51458951 - 51458899
Alignment:
| Q |
103 |
caaccaatgactttttggattggtatctatatctataatgaatttcctttctc |
155 |
Q |
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| T |
51458951 |
caaccaatgaccttttggactggtatctacatcaaaaatgcatttcctttctc |
51458899 |
T |
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