View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5850-1 (Length: 443)
Name: Solexa-NF5850-1
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5850-1 |
 | |
|
| [»] scaffold0268 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0268 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 17961 - 17537
Alignment:
| Q |
13 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17961 |
tacattaccaattaaattacaaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgtttacagtgaaacttgaatcaaac |
17862 |
T |
|
| Q |
113 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17861 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
17762 |
T |
|
| Q |
213 |
acgttaaattaaataaaagaatgacaccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17761 |
acgttaaattaaataaaagaatgacaccgggaggttggttaatcaatgttaaggcgcttcatcattaggtcaagaatacgtccttgcctttgctgctcct |
17662 |
T |
|
| Q |
313 |
gcctgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactct |
412 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
17661 |
gcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgttcttgcctttgctgccatagtct |
17562 |
T |
|
| Q |
413 |
catctcttgaaaatcggaccttgtc |
437 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
17561 |
catctcttgaaaatcggaccttgtc |
17537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 154 - 437
Target Start/End: Original strand, 9867388 - 9867671
Alignment:
| Q |
154 |
tattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtagacgttaaattaaataaaagaatgacaccgggaggttggtta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867388 |
tattacaactctcgcaagagcattttcaaattgaaagcaacaaaacagttttagagtagacgttaaattaaataaaagaatgacaccgggaggttggtta |
9867487 |
T |
|
| Q |
254 |
atcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagaccttgtaccttcaacctca |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9867488 |
atcaatgttaaggcgctgcatcattaggtcaagaagacgtccttgcctttgctgctcctgcatgaactgttgaacatcagcccttgtaccttcaacctca |
9867587 |
T |
|
| Q |
354 |
gtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactctcatctcttgaaaatcggaccttgtc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9867588 |
gtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgccattgtctcatctcttgaaaatcggaccttgtc |
9867671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 9867297 - 9867387
Alignment:
| Q |
36 |
cccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaacttatacagaaataa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
9867297 |
cccacacacagagatagataggtaacattgtaaataatattacaaaagcattgttcacagtgaaacttgaatcaaacttataaagaaataa |
9867387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 22286930 - 22286703
Alignment:
| Q |
13 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22286930 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
22286831 |
T |
|
| Q |
113 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22286830 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
22286731 |
T |
|
| Q |
213 |
acgtt-aaattaaataaaagaatgacac |
239 |
Q |
| |
|
||||| |||||||||||||||| ||||| |
|
|
| T |
22286730 |
acgttaaaattaaataaaagaaagacac |
22286703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 241 - 437
Target Start/End: Complemental strand, 22286637 - 22286441
Alignment:
| Q |
241 |
gggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagaccttgt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22286637 |
gggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagaccttgt |
22286538 |
T |
|
| Q |
341 |
accttcaacctcagtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactctcatctcttgaaaatcggaccttgtc |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
22286537 |
accttcaacctcagtcatcatccttgcacgccactcttggtcatcttgaacctgcctttgctgccatagtctcatctcttgaaaatcggaccttgtc |
22286441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 13923879 - 13923653
Alignment:
| Q |
13 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13923879 |
tacattaccaattaaattacgaacctacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
13923780 |
T |
|
| Q |
113 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13923779 |
ttatacagaaataaaagagtactttgttaaaagtgcattattattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
13923680 |
T |
|
| Q |
213 |
acgttaaattaaataaaagaatgacac |
239 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
13923679 |
acgttaaattaaataaaagaaagacac |
13923653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 237 - 437
Target Start/End: Complemental strand, 13923582 - 13923383
Alignment:
| Q |
237 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagacc |
336 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13923582 |
caccgggaggttggtta-tcaatgttaaggcgctacaccattaggtcaagaatacgtccttgcctttgttgctcctgcctgatctgttgaacatcagacc |
13923484 |
T |
|
| Q |
337 |
ttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactctcatctcttgaaaatcggaccttgt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
13923483 |
ttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgaacctgcctttgctgccctagtctcatctcttgaaaatcggaccttgt |
13923384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 2195783 - 2195557
Alignment:
| Q |
13 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2195783 |
tacattaccaattaaattacgaacctacacacatagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
2195684 |
T |
|
| Q |
113 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2195683 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
2195584 |
T |
|
| Q |
213 |
acgttaaattaaataaaagaatgacac |
239 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
2195583 |
acgttaaattaaataaaagaaagacac |
2195557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 24017908 - 24018133
Alignment:
| Q |
13 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
24017908 |
tacattaccaattaaattacgaacccacacacatagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttaaaccaaa- |
24018006 |
T |
|
| Q |
113 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24018007 |
ttatatagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
24018106 |
T |
|
| Q |
213 |
acgttaaattaaataaaagaatgacac |
239 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
24018107 |
acgttaaattaaataaaagaaagacac |
24018133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 237 - 437
Target Start/End: Complemental strand, 2195495 - 2195295
Alignment:
| Q |
237 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagacc |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2195495 |
caccgggaggttggttaatcaatgttaaggcgctgcaccattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagacc |
2195396 |
T |
|
| Q |
337 |
ttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactctcatctcttgaaaatcggaccttgt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
2195395 |
ttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgaacctgcctttgttgccatagtctcatctcttgaaaatcggaccttgt |
2195296 |
T |
|
| Q |
437 |
c |
437 |
Q |
| |
|
| |
|
|
| T |
2195295 |
c |
2195295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 237 - 437
Target Start/End: Original strand, 24018195 - 24018395
Alignment:
| Q |
237 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagacc |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24018195 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacatccttgcctttgctgttcctgcctgatctgttgaacatcagacc |
24018294 |
T |
|
| Q |
337 |
ttgtaccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactctcatctcttgaaaatcggaccttgt |
436 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
24018295 |
ttgtaccttcaaccttagtcatcatccttgcacgccactcttggtcatcttgaacctgcctttgctgccatagtctcatctcttgaaaatcggaccttgt |
24018394 |
T |
|
| Q |
437 |
c |
437 |
Q |
| |
|
| |
|
|
| T |
24018395 |
c |
24018395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 15745216 - 15745436
Alignment:
| Q |
13 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745216 |
tacattaccaattaaattacgaacctacacacagagatagataggtaacatcgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
15745315 |
T |
|
| Q |
113 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745316 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
15745415 |
T |
|
| Q |
213 |
acgttaaattaaataaaagaa |
233 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
15745416 |
atgttaaattaaataaaagaa |
15745436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 242 - 437
Target Start/End: Original strand, 15745517 - 15745711
Alignment:
| Q |
242 |
ggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagaccttgta |
341 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745517 |
ggaggttggtta-tcaatgttaaggcgctgcatcattaggtcaagaatacgtccctgcctttgctgctcctgcctgatctgttgaacatcagaccttgta |
15745615 |
T |
|
| Q |
342 |
ccttcaacctcagtcatcatccttgcacgccactcttggtcatcttgtgcttgcctttgctgctccactctcatctcttgaaaatcggaccttgtc |
437 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
15745616 |
ccttcaacctcaatcatcatccttgcacgccactcttggtcatcttgaacctgcctttgctactctagtctcatctcttgaaaatcggaccttgtc |
15745711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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