View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5850-3 (Length: 219)

Name: Solexa-NF5850-3
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5850-3
Solexa-NF5850-3
[»] scaffold0268 (1 HSPs)
scaffold0268 (1-219)||(17301-17519)
[»] chr6 (2 HSPs)
chr6 (1-219)||(24018413-24018631)
chr6 (1-219)||(2195059-2195277)
[»] chr7 (1 HSPs)
chr7 (1-219)||(13923147-13923365)
[»] chr5 (1 HSPs)
chr5 (1-219)||(22286205-22286423)
[»] chr4 (1 HSPs)
chr4 (1-219)||(15745729-15745947)
[»] chr8 (1 HSPs)
chr8 (1-219)||(9867689-9867907)


Alignment Details
Target: scaffold0268 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17301 - 17519
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  17301 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatctagagaggactaacacatccaatccagcaaattggatttattctg 17400  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17401 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 17500  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  17501 ggaatggcgtacaaggata 17519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 24018631 - 24018413
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24018631 agagaataatttcaattgagggttgataaacaagacgcgtttctattgccaaatccagagaggaccgacacatccaatccagcaaattggatttattctg 24018532  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24018531 atttagatccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 24018432  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  24018431 ggaatggcgtacaaggata 24018413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2195059 - 2195277
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    ||||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2195059 agagaacaatttcaattgagggttgataaccaagatgcgtttgtattgccaaatccagagaggactgacacatccaatccagcaaattggatttattcag 2195158  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2195159 atttagatccagaagttgcagaagcgcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 2195258  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  2195259 ggaatggcgtacaaggata 2195277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13923147 - 13923365
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    ||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13923147 agagaacaatttcgattgagggttgataaccaagacgcgtttgtattgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 13923246  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13923247 atttagatccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 13923346  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  13923347 ggaatggcgtacaaggata 13923365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 22286205 - 22286423
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22286205 agagaacaatttcaattgagggttgataaacaagacgcgtttctattgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 22286304  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||  ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22286305 atttagatccacaagttgcagaagagcaacatcttgaagacgacacaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 22286404  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  22286405 ggaatggcgtacaaggata 22286423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15745947 - 15745729
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    ||||||||||||  ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15745947 agagaacaattttgattgagggttgataaccaagacgcgtttgtattgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 15745848  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15745847 atttagatccagaagttgcagaagagcagcatcttgaagacgacgcagcggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 15745748  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  15745747 ggaatggcgtacaaggata 15745729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9867907 - 9867689
Alignment:
Q  1 agagaacaatttcaattgagggttgataaacaagacgcgtttctactgccaaatccagagaggactgacacatccaatccagcaaattggatttattctg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  9867907 agagaacaatttcaattgagggttgataaacatgacgcgtttctgctgccaaatccagagaggacagacacatccaatccagaaaattggatttattctg 9867808  T
Q  101 atttagggccagaagttgcagaagagcagcatcttgaagacgacgcaccggctgctgaccaagtggaacatcaaccacacccggtggttcaagatgacca 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||    
T  9867807 atttagggccagaagttgcagaagagcagcatcttcaagacgacgcaccggctcctgaccaagtgcaacatcaaccacccccggtggtacaagatgacca 9867708  T
Q  201 ggaatggcgtacaaggata 219  Q
    |||||||||||||||||||    
T  9867707 ggaatggcgtacaaggata 9867689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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