View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5850-4 (Length: 216)

Name: Solexa-NF5850-4
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5850-4
Solexa-NF5850-4
[»] chr7 (2 HSPs)
chr7 (17-140)||(13923418-13923541)
chr7 (148-211)||(13923472-13923535)
[»] chr5 (2 HSPs)
chr5 (17-140)||(22286476-22286599)
chr5 (148-211)||(22286530-22286593)
[»] chr6 (4 HSPs)
chr6 (17-138)||(2195332-2195453)
chr6 (17-140)||(24018237-24018360)
chr6 (148-211)||(2195384-2195447)
chr6 (148-211)||(24018243-24018306)
[»] chr4 (2 HSPs)
chr4 (17-144)||(15745553-15745680)
chr4 (148-211)||(15745559-15745622)
[»] scaffold0268 (2 HSPs)
scaffold0268 (17-140)||(17572-17695)
scaffold0268 (148-211)||(17626-17689)
[»] chr8 (2 HSPs)
chr8 (17-140)||(9867513-9867636)
chr8 (148-211)||(9867519-9867582)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 13923541 - 13923418
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13923541 aggtcaagaatacgtccttgcctttgttgctcctgcctgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 13923442  T
Q  117 ggtcatcttgaacctgcctttgct 140  Q
    ||||||||||||||||||||||||    
T  13923441 ggtcatcttgaacctgcctttgct 13923418  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 13923472 - 13923535
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  13923472 ttgaaggtacaaggtctgatgttcaacagatcaggcaggagcaacaaaggcaaggacgtattct 13923535  T

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Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 22286599 - 22286476
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22286599 aggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 22286500  T
Q  117 ggtcatcttgaacctgcctttgct 140  Q
    ||||||||||||||||||||||||    
T  22286499 ggtcatcttgaacctgcctttgct 22286476  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 22286530 - 22286593
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  22286530 ttgaaggtacaaggtctgatgttcaacagatcaggcaggagcagcaaaggcaaggacgtattct 22286593  T

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Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 2195453 - 2195332
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2195453 aggtcaagaatacgtccttgcctttgctgctcctgcctgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 2195354  T
Q  117 ggtcatcttgaacctgcctttg 138  Q
    ||||||||||||||||||||||    
T  2195353 ggtcatcttgaacctgcctttg 2195332  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 24018237 - 24018360
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    ||||||||||||| |||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24018237 aggtcaagaatacatccttgcctttgctgttcctgcctgatctgttgaacatcagaccttgtaccttcaaccttagtcatcatccttgcacgccactctt 24018336  T
Q  117 ggtcatcttgaacctgcctttgct 140  Q
    ||||||||||||||||||||||||    
T  24018337 ggtcatcttgaacctgcctttgct 24018360  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 2195384 - 2195447
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2195384 ttgaaggtacaaggtctgatgttcaacagatcaggcaggagcagcaaaggcaaggacgtattct 2195447  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 24018306 - 24018243
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    ||||||||||||||||||||||||||||||||| ||||||  | |||||||||||| |||||||    
T  24018306 ttgaaggtacaaggtctgatgttcaacagatcaggcaggaacagcaaaggcaaggatgtattct 24018243  T

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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 15745553 - 15745680
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    ||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15745553 aggtcaagaatacgtccctgcctttgctgctcctgcctgatctgttgaacatcagaccttgtaccttcaacctcaatcatcatccttgcacgccactctt 15745652  T
Q  117 ggtcatcttgaacctgcctttgctactc 144  Q
    ||||||||||||||||||||||||||||    
T  15745653 ggtcatcttgaacctgcctttgctactc 15745680  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 15745622 - 15745559
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||    
T  15745622 ttgaaggtacaaggtctgatgttcaacagatcaggcaggagcagcaaaggcagggacgtattct 15745559  T

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Target: scaffold0268 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 17695 - 17572
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17695 aggtcaagaatacgtccttgcctttgctgctcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 17596  T
Q  117 ggtcatcttgaacctgcctttgct 140  Q
    ||||||||||  | ||||||||||    
T  17595 ggtcatcttgttcttgcctttgct 17572  T

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Target: scaffold0268; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 17626 - 17689
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  17626 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagcagcaaaggcaaggacgtattct 17689  T

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Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 9867513 - 9867636
Alignment:
Q  17 aggtcaagaatacgtccttgcctttgttactcctgcatgatctgttgaacatcagaccttgtaccttcaacctcagtcatcatccttgcacgccactctt 116  Q
    |||||||||| ||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9867513 aggtcaagaagacgtccttgcctttgctgctcctgcatgaactgttgaacatcagcccttgtaccttcaacctcagtcatcatccttgcacgccactctt 9867612  T
Q  117 ggtcatcttgaacctgcctttgct 140  Q
    ||||||||||  | ||||||||||    
T  9867613 ggtcatcttgtgcttgcctttgct 9867636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 9867582 - 9867519
Alignment:
Q  148 ttgaaggtacaaggtctgatgttcaacagatcatgcaggagtaacaaaggcaaggacgtattct 211  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  9867582 ttgaaggtacaagggctgatgttcaacagttcatgcaggagcagcaaaggcaaggacgtcttct 9867519  T

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