View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5850-5 (Length: 189)
Name: Solexa-NF5850-5
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5850-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 37894022 - 37894210
Alignment:
| Q |
1 |
aagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttgg |
100 |
Q |
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| T |
37894022 |
aagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttgg |
37894121 |
T |
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| Q |
101 |
tctctatgttaagaatgtaattaattcannnnnnncaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaattgtg |
189 |
Q |
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| T |
37894122 |
tctctatgttaagaatgtaattaattcatttttttcaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaattgtg |
37894210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 37189119 - 37189310
Alignment:
| Q |
1 |
aagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttgg |
100 |
Q |
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| T |
37189119 |
aagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttgg |
37189218 |
T |
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| Q |
101 |
tctctatgttaagaatgtaattaattca----nnnnnnncaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaattgtg |
189 |
Q |
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| T |
37189219 |
tctctatgttaagaatgtaattaattcattttttttcttgaggaggacacaaaaaccaagagttgtaa-ttgattaatttcaactcaattgtg |
37189310 |
T |
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