View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5850-7 (Length: 161)
Name: Solexa-NF5850-7
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5850-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 7e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 7e-69
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 37893875 - 37894027
Alignment:
| Q |
9 |
agaaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagt |
108 |
Q |
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| T |
37893875 |
agaaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagt |
37893974 |
T |
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| Q |
109 |
tgctgnnnnnnngtcattgactatggaaatggtttcaagacagagacaagaat |
161 |
Q |
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| T |
37893975 |
tgctgaaaaaaagtcattgactatggaaatggtttcaagacagagacaagaat |
37894027 |
T |
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Target: chr5; HSP #2
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 37188975 - 37189124
Alignment:
| Q |
11 |
aaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttg |
110 |
Q |
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| T |
37188975 |
aaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagtat |
37189074 |
T |
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| Q |
111 |
ctgnnnnnnngtcattgactatggaaatggtttcaagacagagacaagaat |
161 |
Q |
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| T |
37189075 |
acg-aaaaaagtcattgactatggaaatggtttcaagacagagacaagaat |
37189124 |
T |
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