View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5850-8 (Length: 151)
Name: Solexa-NF5850-8
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5850-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 4e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 12662819 - 12662912
Alignment:
| Q |
52 |
cttggctttgtttcttcaattccaaatgattgtattaatgttcagcacaacaactaaaacaggcatcattcattgattagacaaacacctattacaaata |
151 |
Q |
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| T |
12662819 |
cttggctttgtttcttcaataccaaatgattgtattaatgttcagcacaataactaaaaca------attcattgattagaccaacccttattacaaata |
12662912 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44053324 - 44053286
Alignment:
| Q |
1 |
taaaaataagccatttagttacaacaatgcgcagaaaag |
39 |
Q |
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| T |
44053324 |
taaaaataagccatttagttacaacaatgcacagaaaag |
44053286 |
T |
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