View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5850-9 (Length: 127)
Name: Solexa-NF5850-9
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5850-9 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 5e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 37894569 - 37894449
Alignment:
| Q |
7 |
attacgcatattgcactcacgatgacttttttagatcaaatcggtcgatcactaaatgtgtgtttggattagtttttggaggctcatttccacttcccaa |
106 |
Q |
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| T |
37894569 |
attacgcatattgcactcacgatgacttttttagatcaaatcggtccatcactaaatgtgtgtttggattagtttttggaggctcatttccacttcccaa |
37894470 |
T |
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| Q |
107 |
tgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
37894469 |
tgcactttaaacgtgaaaatt |
37894449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 28521453 - 28521389
Alignment:
| Q |
63 |
tgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
28521453 |
tgtgtatttagattagcttatagaagctcatttccactttccaattcactttaaacatgaaaatt |
28521389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 9729881 - 9729820
Alignment:
| Q |
66 |
gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
9729881 |
gtgtttggattagcttttggaggctcatctccacttcccaatgcactttaaacgtgaaaatt |
9729820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 15011366 - 15011427
Alignment:
| Q |
66 |
gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
15011366 |
gtgtttggattagcttttggaggctcatttcaacttctcaatgcactttaaatgtgaaaatt |
15011427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 36801163 - 36801224
Alignment:
| Q |
66 |
gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
36801163 |
gtgtttcgatttgtttttataggtttatttctacttcccaatgcactttaaacatgaaaatt |
36801224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 42428236 - 42428177
Alignment:
| Q |
66 |
gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaa |
125 |
Q |
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| T |
42428236 |
gtgtttggattaacttttggagcctcatttccactttccaatgcactttaaatgtgaaaa |
42428177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 35861169 - 35861102
Alignment:
| Q |
58 |
ctaaatgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
35861169 |
ctaagtgtgtatttggattagcttttggaggctcatttccacttcccagtgca--ttaaatgtgaaaatt |
35861102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 5099808 - 5099872
Alignment:
| Q |
63 |
tgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
5099808 |
tgtgtgtttggattagcttttggagactcattttcacttttagatgcactttaaaagtgaaaatt |
5099872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 23860498 - 23860569
Alignment:
| Q |
56 |
cactaaatgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt |
127 |
Q |
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| T |
23860498 |
cactaagtgggtgtttggattagtttttagaggttcattttcacttttcaatgcattttaaacgcgaaaatt |
23860569 |
T |
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