View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5851-15 (Length: 70)

Name: Solexa-NF5851-15
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5851-15
Solexa-NF5851-15
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-65)||(27369-27433)
[»] scaffold0117 (1 HSPs)
scaffold0117 (1-65)||(22820-22884)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-65)||(39118-39182)
[»] chr2 (3 HSPs)
chr2 (1-65)||(19644317-19644381)
chr2 (1-59)||(45527171-45527229)
chr2 (5-59)||(19818951-19819005)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-59)||(22311-22369)
[»] chr3 (3 HSPs)
chr3 (1-59)||(3162020-3162078)
chr3 (1-65)||(19165403-19165467)
chr3 (1-38)||(6001818-6001855)
[»] chr1 (1 HSPs)
chr1 (1-59)||(21190796-21190854)
[»] scaffold0337 (1 HSPs)
scaffold0337 (1-65)||(2527-2591)
[»] chr6 (2 HSPs)
chr6 (1-65)||(24506782-24506846)
chr6 (1-59)||(18451541-18451599)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-59)||(61075-61133)
[»] chr7 (4 HSPs)
chr7 (1-59)||(33059157-33059215)
chr7 (1-59)||(18985842-18985900)
chr7 (1-59)||(19000470-19000528)
chr7 (1-61)||(10664035-10664095)
[»] chr5 (2 HSPs)
chr5 (1-62)||(21403194-21403255)
chr5 (1-62)||(21419418-21419479)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-58)||(83426-83483)
[»] chr8 (3 HSPs)
chr8 (1-59)||(7464187-7464245)
chr8 (1-42)||(38049978-38050019)
chr8 (1-61)||(22709443-22709503)
[»] chr4 (2 HSPs)
chr4 (3-65)||(14476267-14476330)
chr4 (3-61)||(14354739-14354797)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-41)||(7620-7660)


Alignment Details
Target: scaffold0217 (Bit Score: 53; Significance: 4e-22; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27433 - 27369
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  27433 cgtcataggtgtcatgctctgatacgtaaagggatggggatgtttttgtgttttgttttcctttg 27369  T

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Target: scaffold0117 (Bit Score: 53; Significance: 4e-22; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22884 - 22820
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||    
T  22884 cgtcataggagtcatgctctgatacgtaacgggatggggatgtatttgtgttttgttttcctttg 22820  T

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Target: scaffold0092 (Bit Score: 49; Significance: 9e-20; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39118 - 39182
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||    
T  39118 cgtcatagaagtcatgctctgatacgtaatgggatggggatgtttatgtgtttttttttcctttg 39182  T

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Target: chr2 (Bit Score: 49; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19644381 - 19644317
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  19644381 cgtcataggagtcatgctctgatacgtaatgggatggagatctttttgtgttttgttttcttttg 19644317  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45527229 - 45527171
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||    
T  45527229 cgtcataggagtcatgctctgatacgtaacgggatggagatgtttatgtgttttgtttt 45527171  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 19819005 - 19818951
Alignment:
Q  5 ataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||    
T  19819005 ataggagtcatgctctgatacgtaacgggatggggatgtttatgttttttgtttt 19818951  T

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Target: scaffold0017 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22369 - 22311
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  22369 cgtcataggagtcatgctctgatacgtaatgagatggggatgtttatgtgttttgtttt 22311  T

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Target: chr3 (Bit Score: 47; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3162020 - 3162078
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  3162020 cgtcataggagtcatgctctgatacgtaacgggatggggatgtttatgtgttttgtttt 3162078  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19165403 - 19165467
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||| |||||||  ||||||||||    
T  19165403 cgtcataggagtcatgctctgatacgtaacgggatggagatgtttatgtgtttgtttttcctttg 19165467  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6001855 - 6001818
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggg 38  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  6001855 cgtcataggagtcatgctctgatacgtaacgggatggg 6001818  T

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Target: chr1 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21190796 - 21190854
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  21190796 cgtcataggagtcatgctctgatacgtaataggatggggatgtttatgtgttttgtttt 21190854  T

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Target: scaffold0337 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2591 - 2527
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    |||||||||||||||||| ||||||||||  ||||| |||||||| |||||||||||||||||||    
T  2591 cgtcataggagtcatgctctgatacgtaacaggatgaggatgtttatgtgttttgttttcctttg 2527  T

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Target: chr6 (Bit Score: 45; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24506782 - 24506846
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcctttg 65  Q
    |||||||||||||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||    
T  24506782 cgtcataggagtcatgctctgatacgtaacgggatgaggaagtttatgtgttttgttttcctttg 24506846  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18451599 - 18451541
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||||    
T  18451599 cgtcataggagtcatgctctgatacgtaacgggatagggatgtttgtgtgttttgtttt 18451541  T

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Target: scaffold0058 (Bit Score: 43; Significance: 3e-16; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 61075 - 61133
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||    
T  61075 cgtcataggagtcatgctctgatacgtaacgagatggggatgtttatgtgttttgtttt 61133  T

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Target: chr7 (Bit Score: 43; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33059215 - 33059157
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  33059215 cgtcatagaagtcatgctatgatacgtaacgggatggggatgtttatatgttttgtttt 33059157  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18985842 - 18985900
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    ||||||| |||||||||| |||||| ||| |||||| |||||||| |||||||||||||    
T  18985842 cgtcatatgagtcatgctctgatacataacgggatgaggatgtttatgtgttttgtttt 18985900  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19000470 - 19000528
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    ||||||| |||||||||| |||||| ||| |||||| |||||||| |||||||||||||    
T  19000470 cgtcatatgagtcatgctctgatacataacgggatgaggatgtttatgtgttttgtttt 19000528  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10664035 - 10664095
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcc 61  Q
    |||||||||||||||||| |||||||||| || ||||||||  || |||||||| ||||||    
T  10664035 cgtcataggagtcatgctctgatacgtaacggaatggggattcttatgtgttttattttcc 10664095  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21403255 - 21403194
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcct 62  Q
    ||||||| |||||||||| ||||||||||  ||||||||||||||||||||||| |||||||    
T  21403255 cgtcataagagtcatgctctgatacgtaacaggatggggatgtttttgtgtttttttttcct 21403194  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21419479 - 21419418
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcct 62  Q
    ||||||| |||||||||| ||||||||||  ||||||||||||||||||||||| |||||||    
T  21419479 cgtcataagagtcatgctctgatacgtaacaggatggggatgtttttgtgtttttttttcct 21419418  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 83426 - 83483
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttt 58  Q
    |||||||||||||||||| ||||||||||  |||| ||| ||||||||||||||||||    
T  83426 cgtcataggagtcatgctctgatacgtaacaggatagggttgtttttgtgttttgttt 83483  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7464187 - 7464245
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgtttt 59  Q
    ||||||||||||||||||  | ||||||| ||||||||||||||| |||||||| ||||    
T  7464187 cgtcataggagtcatgctcagttacgtaacgggatggggatgtttatgtgttttatttt 7464245  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38050019 - 38049978
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatg 42  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  38050019 cgtcataggagtcatgttttgatacgtaatgggatggggatg 38049978  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22709443 - 22709503
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcc 61  Q
    |||||||||||||||||| |||||||||| |||||| ||||  || |||||||| ||||||    
T  22709443 cgtcataggagtcatgctctgatacgtaacgggatgtggattcttatgtgttttattttcc 22709503  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 14476330 - 14476267
Alignment:
Q  3 tcataggagtcatgctatgatacgtaatgggatgggg-atgtttttgtgttttgttttcctttg 65  Q
    |||||||||||| ||| ||||||||||  |||||||| || ||| |||||||||||||||||||    
T  14476330 tcataggagtcaggctctgatacgtaacaggatgggggatatttatgtgttttgttttcctttg 14476267  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 14354739 - 14354797
Alignment:
Q  3 tcataggagtcatgctatgatacgtaatgggatggggatgtttttgtgttttgttttcc 61  Q
    |||||||||||||||| ||||||||||  ||||||||||  || |||||||| ||||||    
T  14354739 tcataggagtcatgctctgatacgtaacaggatggggattcttatgtgttttattttcc 14354797  T

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Target: scaffold0125 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7620 - 7660
Alignment:
Q  1 cgtcataggagtcatgctatgatacgtaatgggatggggat 41  Q
    |||||||||||||||||| |||||||||| | |||||||||    
T  7620 cgtcataggagtcatgctctgatacgtaacgagatggggat 7660  T

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