View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5851-16 (Length: 69)

Name: Solexa-NF5851-16
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5851-16
Solexa-NF5851-16
[»] chr2 (24 HSPs)
chr2 (1-69)||(25045833-25045901)
chr2 (4-69)||(5985894-5985959)
chr2 (1-69)||(18390486-18390554)
chr2 (1-65)||(24793031-24793095)
chr2 (1-69)||(24834291-24834359)
chr2 (5-69)||(25141920-25141984)
chr2 (5-69)||(3539553-3539617)
chr2 (5-36)||(9340843-9340874)
chr2 (5-36)||(12901026-12901057)
chr2 (5-36)||(13306104-13306135)
chr2 (5-36)||(16929016-16929047)
chr2 (5-36)||(16980763-16980794)
chr2 (5-36)||(16986504-16986535)
chr2 (5-36)||(16997610-16997641)
chr2 (5-36)||(17004243-17004274)
chr2 (5-36)||(22320500-22320531)
chr2 (5-36)||(22326653-22326684)
chr2 (5-36)||(23171647-23171678)
chr2 (5-36)||(23582904-23582935)
chr2 (5-36)||(24913477-24913508)
chr2 (5-36)||(26877082-26877113)
chr2 (5-36)||(27216626-27216657)
chr2 (5-36)||(27617857-27617888)
chr2 (5-36)||(28431427-28431458)
[»] chr4 (28 HSPs)
chr4 (3-69)||(15612809-15612875)
chr4 (4-69)||(20931-20996)
chr4 (4-69)||(32466465-32466530)
chr4 (1-69)||(51993276-51993344)
chr4 (4-36)||(26284421-26284453)
chr4 (1-69)||(27996507-27996575)
chr4 (5-36)||(7900686-7900717)
chr4 (5-36)||(8392049-8392080)
chr4 (5-36)||(12475580-12475611)
chr4 (5-36)||(12482210-12482241)
chr4 (5-36)||(14074390-14074421)
chr4 (5-36)||(14267924-14267955)
chr4 (5-36)||(15149016-15149047)
chr4 (5-36)||(15257168-15257199)
chr4 (5-36)||(15321560-15321591)
chr4 (5-36)||(15362693-15362724)
chr4 (5-36)||(15383008-15383039)
chr4 (5-36)||(16231356-16231387)
chr4 (5-36)||(17089493-17089524)
chr4 (5-36)||(17808973-17809004)
chr4 (5-36)||(18296185-18296216)
chr4 (5-36)||(19779804-19779835)
chr4 (5-36)||(20115703-20115734)
chr4 (5-36)||(22195180-22195211)
chr4 (5-36)||(23954708-23954739)
chr4 (5-36)||(23961370-23961401)
chr4 (5-36)||(28568958-28568989)
chr4 (5-36)||(36884249-36884280)
[»] chr8 (21 HSPs)
chr8 (4-69)||(22254493-22254558)
chr8 (4-69)||(19699878-19699943)
chr8 (4-69)||(17218418-17218483)
chr8 (4-69)||(23419159-23419224)
chr8 (5-69)||(20022304-20022368)
chr8 (1-69)||(36727310-36727378)
chr8 (1-69)||(23900259-23900327)
chr8 (1-69)||(37516323-37516391)
chr8 (4-36)||(28398208-28398240)
chr8 (5-69)||(45470613-45470677)
chr8 (5-36)||(8354277-8354308)
chr8 (5-36)||(16091844-16091875)
chr8 (5-36)||(17669084-17669115)
chr8 (5-36)||(17675736-17675767)
chr8 (5-36)||(18855498-18855529)
chr8 (5-36)||(18865893-18865924)
chr8 (5-36)||(19118077-19118108)
chr8 (5-36)||(22115186-22115217)
chr8 (5-36)||(22121888-22121919)
chr8 (5-36)||(22122899-22122930)
chr8 (5-36)||(29123646-29123677)
[»] scaffold0075 (1 HSPs)
scaffold0075 (4-69)||(60630-60695)
[»] chr5 (34 HSPs)
chr5 (4-69)||(25250097-25250162)
chr5 (4-69)||(25313881-25313946)
chr5 (4-69)||(10953807-10953872)
chr5 (5-69)||(21618197-21618261)
chr5 (4-36)||(17284627-17284659)
chr5 (4-36)||(25573898-25573930)
chr5 (4-36)||(29470872-29470904)
chr5 (5-36)||(1691950-1691981)
chr5 (5-36)||(17706444-17706475)
chr5 (5-36)||(18038181-18038212)
chr5 (5-36)||(19992444-19992475)
chr5 (5-36)||(21884703-21884734)
chr5 (5-36)||(22133560-22133591)
chr5 (5-36)||(22265506-22265537)
chr5 (5-36)||(22334331-22334362)
chr5 (5-36)||(22598139-22598170)
chr5 (5-36)||(22598189-22598220)
chr5 (5-36)||(23584749-23584780)
chr5 (5-36)||(23610511-23610542)
chr5 (5-36)||(23841907-23841938)
chr5 (5-36)||(24471761-24471792)
chr5 (5-36)||(25107345-25107376)
chr5 (5-36)||(25166438-25166469)
chr5 (5-36)||(25406987-25407018)
chr5 (5-36)||(27517311-27517342)
chr5 (5-36)||(27523948-27523979)
chr5 (5-36)||(27609246-27609277)
chr5 (5-36)||(27615906-27615937)
chr5 (5-36)||(27686842-27686873)
chr5 (5-36)||(40707681-40707712)
chr5 (5-36)||(40714323-40714354)
chr5 (5-36)||(41097736-41097767)
chr5 (5-36)||(41293949-41293980)
chr5 (5-36)||(41776377-41776408)
[»] chr7 (26 HSPs)
chr7 (2-69)||(4071533-4071600)
chr7 (4-69)||(10659121-10659186)
chr7 (2-69)||(36704841-36704908)
chr7 (26-69)||(48807597-48807640)
chr7 (4-36)||(11768389-11768421)
chr7 (4-36)||(20702504-20702536)
chr7 (4-36)||(32768235-32768267)
chr7 (5-36)||(22242-22273)
chr7 (5-36)||(60190-60221)
chr7 (5-36)||(70279-70310)
chr7 (5-36)||(74387-74418)
chr7 (5-36)||(1245535-1245566)
chr7 (5-36)||(7536746-7536777)
chr7 (5-36)||(8201589-8201620)
chr7 (5-36)||(9510525-9510556)
chr7 (5-36)||(11366761-11366792)
chr7 (5-36)||(12702901-12702932)
chr7 (5-36)||(13685023-13685054)
chr7 (5-36)||(14654882-14654913)
chr7 (5-36)||(15022690-15022721)
chr7 (5-36)||(16406808-16406839)
chr7 (5-36)||(18176691-18176722)
chr7 (5-36)||(18183363-18183394)
chr7 (5-36)||(40522875-40522906)
chr7 (5-36)||(44785989-44786020)
chr7 (5-36)||(44792630-44792661)
[»] scaffold0671 (1 HSPs)
scaffold0671 (5-69)||(4659-4723)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-69)||(5663-5731)
[»] scaffold0589 (1 HSPs)
scaffold0589 (4-69)||(4102-4167)
[»] scaffold0220 (1 HSPs)
scaffold0220 (4-69)||(19667-19732)
[»] scaffold0010 (1 HSPs)
scaffold0010 (4-69)||(126573-126638)
[»] chr6 (24 HSPs)
chr6 (4-69)||(24550437-24550502)
chr6 (4-69)||(31732175-31732240)
chr6 (4-36)||(33443707-33443739)
chr6 (5-36)||(1538420-1538451)
chr6 (5-36)||(1544509-1544540)
chr6 (5-36)||(2869603-2869634)
chr6 (5-36)||(4232964-4232995)
chr6 (5-36)||(6981220-6981251)
chr6 (5-36)||(8229448-8229479)
chr6 (5-36)||(18194048-18194079)
chr6 (5-36)||(18931637-18931668)
chr6 (5-36)||(20061211-20061242)
chr6 (1-36)||(20137308-20137343)
chr6 (5-36)||(20649305-20649336)
chr6 (5-36)||(20802317-20802348)
chr6 (1-36)||(22195526-22195561)
chr6 (1-36)||(22376101-22376136)
chr6 (5-36)||(22863507-22863538)
chr6 (5-36)||(25135185-25135216)
chr6 (5-36)||(25928781-25928812)
chr6 (5-36)||(26131078-26131109)
chr6 (5-36)||(29593335-29593366)
chr6 (5-36)||(30597827-30597858)
chr6 (5-36)||(30637645-30637676)
[»] chr1 (11 HSPs)
chr1 (4-69)||(42697501-42697566)
chr1 (4-69)||(45755238-45755303)
chr1 (5-36)||(18599619-18599650)
chr1 (5-36)||(20215442-20215473)
chr1 (5-36)||(21829276-21829307)
chr1 (5-36)||(21844789-21844820)
chr1 (5-36)||(41478041-41478072)
chr1 (5-36)||(44844396-44844427)
chr1 (5-36)||(46156835-46156866)
chr1 (5-36)||(51328192-51328223)
chr1 (5-36)||(51334827-51334858)
[»] scaffold0628 (1 HSPs)
scaffold0628 (5-65)||(1334-1394)
[»] chr3 (27 HSPs)
chr3 (5-40)||(10845768-10845803)
chr3 (20-69)||(16050694-16050743)
chr3 (4-36)||(12511999-12512031)
chr3 (4-36)||(15726443-15726475)
chr3 (4-36)||(16336737-16336769)
chr3 (4-36)||(23052581-23052613)
chr3 (4-36)||(23704281-23704313)
chr3 (4-36)||(23722737-23722769)
chr3 (4-36)||(23741193-23741225)
chr3 (4-36)||(41201310-41201342)
chr3 (5-36)||(418582-418613)
chr3 (5-36)||(839807-839838)
chr3 (5-36)||(1332575-1332606)
chr3 (5-36)||(5106397-5106428)
chr3 (5-36)||(5149433-5149464)
chr3 (5-36)||(5222014-5222045)
chr3 (5-36)||(11300025-11300056)
chr3 (26-69)||(13185631-13185674)
chr3 (5-36)||(13251280-13251311)
chr3 (5-36)||(13257926-13257957)
chr3 (5-36)||(16369992-16370023)
chr3 (5-36)||(19809592-19809623)
chr3 (5-36)||(26890017-26890048)
chr3 (5-36)||(28350633-28350664)
chr3 (5-36)||(30066557-30066588)
chr3 (5-36)||(37615953-37615984)
chr3 (5-36)||(41091860-41091891)
[»] scaffold0001 (2 HSPs)
scaffold0001 (6-68)||(162492-162554)
scaffold0001 (4-36)||(447133-447165)
[»] scaffold0151 (1 HSPs)
scaffold0151 (4-69)||(30827-30892)
[»] scaffold0056 (1 HSPs)
scaffold0056 (5-66)||(66837-66898)
[»] scaffold0042 (1 HSPs)
scaffold0042 (4-69)||(29107-29172)
[»] scaffold0761 (1 HSPs)
scaffold0761 (4-36)||(5811-5843)
[»] scaffold0750 (1 HSPs)
scaffold0750 (4-36)||(4258-4290)
[»] scaffold0708 (1 HSPs)
scaffold0708 (4-36)||(1881-1913)
[»] scaffold0676 (1 HSPs)
scaffold0676 (4-36)||(5011-5043)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-69)||(52814-52882)
[»] scaffold0005 (1 HSPs)
scaffold0005 (4-36)||(307658-307690)
[»] scaffold1257 (1 HSPs)
scaffold1257 (5-36)||(1802-1833)
[»] scaffold0839 (1 HSPs)
scaffold0839 (5-36)||(1581-1612)
[»] scaffold0454 (1 HSPs)
scaffold0454 (5-36)||(5927-5958)
[»] scaffold0372 (1 HSPs)
scaffold0372 (5-36)||(4624-4655)
[»] scaffold0259 (1 HSPs)
scaffold0259 (5-36)||(10738-10769)
[»] scaffold0215 (1 HSPs)
scaffold0215 (5-36)||(27407-27438)
[»] scaffold0210 (2 HSPs)
scaffold0210 (5-36)||(21309-21340)
scaffold0210 (5-36)||(29201-29232)
[»] scaffold0155 (1 HSPs)
scaffold0155 (5-36)||(9330-9361)
[»] scaffold0109 (2 HSPs)
scaffold0109 (5-36)||(27205-27236)
scaffold0109 (5-36)||(38331-38362)
[»] scaffold0061 (1 HSPs)
scaffold0061 (5-36)||(58974-59005)
[»] scaffold0055 (1 HSPs)
scaffold0055 (5-36)||(61366-61397)
[»] scaffold0052 (3 HSPs)
scaffold0052 (5-36)||(518-549)
scaffold0052 (5-36)||(10919-10950)
scaffold0052 (5-36)||(57341-57372)
[»] scaffold0044 (1 HSPs)
scaffold0044 (5-36)||(31088-31119)
[»] scaffold0036 (2 HSPs)
scaffold0036 (5-36)||(65929-65960)
scaffold0036 (5-36)||(71070-71101)
[»] scaffold0035 (1 HSPs)
scaffold0035 (5-36)||(66039-66070)
[»] scaffold0029 (1 HSPs)
scaffold0029 (5-36)||(125625-125656)
[»] scaffold0028 (2 HSPs)
scaffold0028 (5-36)||(42146-42177)
scaffold0028 (5-36)||(68069-68100)
[»] scaffold0017 (1 HSPs)
scaffold0017 (5-36)||(139628-139659)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 1e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25045833 - 25045901
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25045833 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 25045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 5985894 - 5985959
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||    
T  5985894 aggcgagcgatgaagttcatcactcgcgaggcgagatcagctactcgctatggcaagcgatgaatg 5985959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18390554 - 18390486
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||| ||||||||| | ||| ||||||||||| | | |||||||||||||||| |||||||||||    
T  18390554 gctaggcgggcgatgaagatgatcactcgcgaggcgagaatagctactcgctatggcgagcgatgaatg 18390486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24793095 - 24793031
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatg 65  Q
    |||||||||||||||||||||||| |||||||||||  | |  |||||||||||||| |||||||    
T  24793095 gctaggcgagcgatgaagttcatcactcgcgaggcgaaggcttctactcgctatggcgagcgatg 24793031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24834359 - 24834291
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||||||||| |||||||||||  | |  |||||||||||||| | |||||||||    
T  24834359 gctaggcgagcgatgaagttcatcactcgcgaggcgaaggcttctactcgctatggcgatcgatgaatg 24834291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 25141920 - 25141984
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||| | ||| ||||||||||| | ||| ||||||||||||||||| ||||||||    
T  25141920 ggcgagcgatgaagatgatcactcgcgaggcgagaacaactactcgctatggcaagtgatgaatg 25141984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 3539553 - 3539617
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||| ||||| | ||| ||||||||||| | |||| |||| |||||||| |||||||||||    
T  3539553 ggcgagcggtgaagatgatcactcgcgaggcgagaacagttacttgctatggcgagcgatgaatg 3539617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 9340843 - 9340874
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  9340843 ggcgagcgatgaagttcatcactcgcgaggcg 9340874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 12901057 - 12901026
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  12901057 ggcgagcgatgaagttcatcactcgcgaggcg 12901026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 13306135 - 13306104
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  13306135 ggcgagcgatgaagttcatcactcgcgaggcg 13306104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 16929016 - 16929047
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16929016 ggcgagcgatgaagttcatcactcgcgaggcg 16929047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 16980763 - 16980794
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16980763 ggcgagcgatgaagttcatcactcgcgaggcg 16980794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 16986504 - 16986535
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16986504 ggcgagcgatgaagttcatcactcgcgaggcg 16986535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 16997610 - 16997641
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16997610 ggcgagcgatgaagttcatcactcgcgaggcg 16997641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 17004243 - 17004274
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  17004243 ggcgagcgatgaagttcatcactcgcgaggcg 17004274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 22320531 - 22320500
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22320531 ggcgagcgatgaagttcatcactcgcgaggcg 22320500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 22326684 - 22326653
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22326684 ggcgagcgatgaagttcatccctcgcgaggcg 22326653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23171647 - 23171678
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23171647 ggcgagcgatgaagttcatcactcgcgaggcg 23171678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23582904 - 23582935
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23582904 ggcgagcgatgaagttcatcactcgcgaggcg 23582935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 24913508 - 24913477
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  24913508 ggcgagcgatgaagttcatcactcgcgaggcg 24913477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 26877113 - 26877082
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  26877113 ggcgagcgatgaagttcatcactcgcgaggcg 26877082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27216626 - 27216657
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27216626 ggcgagcgatgaagttcatcactcgcgaggcg 27216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27617857 - 27617888
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27617857 ggcgagcgatgaagttcatcactcgcgaggcg 27617888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 28431458 - 28431427
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  28431458 ggcgagcgatgaagttcatcactcgcgaggcg 28431427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 15612809 - 15612875
Alignment:
Q  3 taggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||    
T  15612809 taggcgagcgatgaagttcatcactcgcgaggggaggacagctactcgctatggcgagcgatgaatg 15612875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 20931 - 20996
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||||||    
T  20931 aggcgagcgatgaagttcatcactcgcgaggcgaggacaactactcgctaaggcgagcgatgaatg 20996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 32466530 - 32466465
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||| | |  ||| ||||||||||||| |||||||||||    
T  32466530 aggcgagcgatgaagttcatcactcgcgaggtgagatcagttactcgctatggcgagcgatgaatg 32466465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 51993276 - 51993344
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||| ||||||||||||||||| ||||||||||| |  |  || ||||||||||| |||||||||||    
T  51993276 gctaggtgagcgatgaagttcatcactcgcgaggcgagatcgtctgctcgctatggcgagcgatgaatg 51993344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 26284453 - 26284421
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  26284453 aggcgagcgatgaagttcatcactcgcgaggcg 26284421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27996507 - 27996575
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||| |||||| ||||||||||| |   |||| ||||||  ||| |||||||||||    
T  27996507 gctaggcgagcgatgaacttcatcactcgcgaggcgagactagctgctcgctggggcgagcgatgaatg 27996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 7900717 - 7900686
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  7900717 ggcgagcgatgaagttcatcactcgcgaggcg 7900686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 8392049 - 8392080
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  8392049 ggcgagcgatgaagttcatcactcgcgaggcg 8392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 12475580 - 12475611
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  12475580 ggcgagcgatgaagttcatcactcgcgaggcg 12475611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 12482210 - 12482241
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  12482210 ggcgagcgatgaagttcatcactcgcgaggcg 12482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 14074390 - 14074421
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  14074390 ggcgagcgatgaagttcatcactcgcgaggcg 14074421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 14267955 - 14267924
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  14267955 ggcgagcgatgaagttcatcactcgcgaggcg 14267924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 15149016 - 15149047
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  15149016 ggcgagcgatgaagttcatcactcgcgaggcg 15149047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 15257168 - 15257199
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  15257168 ggcgagcgatgaagttcatcactcgcgaggcg 15257199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 15321591 - 15321560
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  15321591 ggcgagcgatgaagttcatcactcgcgaggcg 15321560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 15362693 - 15362724
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  15362693 ggcgagcgatgaagttcatcactcgcgaggcg 15362724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 15383039 - 15383008
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  15383039 ggcgagcgatgaagttcatcactcgcgaggcg 15383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 16231387 - 16231356
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16231387 ggcgagcgatgaagttcatcactcgcgaggcg 16231356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 17089524 - 17089493
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  17089524 ggcgagcgatgaagttcatcactcgcgaggcg 17089493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 17808973 - 17809004
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  17808973 ggcgagcgatgaagttcatcactcgcgaggcg 17809004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 18296185 - 18296216
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18296185 ggcgagcgatgaagttcatcactcgcgaggcg 18296216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 19779835 - 19779804
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  19779835 ggcgagcgatgaagttcatcactcgcgaggcg 19779804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 20115703 - 20115734
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  20115703 ggcgagcgatgaagttcatcactcgcgaggcg 20115734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22195180 - 22195211
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22195180 ggcgagcgatgaagttcatcactcgcgaggcg 22195211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23954708 - 23954739
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23954708 ggcgagcgatgaagttcatcactcgcgaggcg 23954739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23961370 - 23961401
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23961370 ggcgagcgatgaagttcatcactcgcgaggcg 23961401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 28568989 - 28568958
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  28568989 ggcgagcgatgaagttcatcactcgcgaggcg 28568958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 36884280 - 36884249
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  36884280 ggcgagcgatgaagttcatcactcgcgaggcg 36884249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-20; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 22254493 - 22254558
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||    
T  22254493 aggcgagcgatgaagttcatcactcgcgaggcgaggacagctactcgctaaggcgagcgatgaatg 22254558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 19699878 - 19699943
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| | |||||||||    
T  19699878 aggcgagcgatgaagttcatcactcgcgaggcgaagacagctactcgctatggcgaacgatgaatg 19699943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 17218418 - 17218483
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||| | ||||||||| ||||||||||| |  |||||||||||||||||||||||||||||    
T  17218418 aggcgagcgttaaagttcatcactcgcgaggcgagatcagctactcgctatggcaagcgatgaatg 17218483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 23419159 - 23419224
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||| ||||||||||||| ||||||||||| |  ||| ||||||||||||| |||||||||||    
T  23419159 aggcgagtgatgaagttcatcactcgcgaggcgagatcagttactcgctatggcgagcgatgaatg 23419224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 20022368 - 20022304
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||| | ||| ||||||||||| | |||| ||||||||||||| |||||||||||    
T  20022368 ggcgagcgatgaagatgatcactcgcgaggcgagaacagttactcgctatggcgagcgatgaatg 20022304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36727378 - 36727310
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||| ||||||||| | ||  ||||||||||| | |||||||||||||||||| |||||||||||    
T  36727378 gctaggcgtgcgatgaagatgataactcgcgaggcgagaacagctactcgctatggcgagcgatgaatg 36727310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23900327 - 23900259
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||| | ||| || |||||||| |   |||||||||||||||| |||||||||||    
T  23900327 gctaggcgagcgatgaagatgatcacttgcgaggcgagagaagctactcgctatggcgagcgatgaatg 23900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37516323 - 37516391
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||| |||||| |||||||||||  | |  | |||||||||||| |||||||||||    
T  37516323 gctaggcgagcgatgaacttcatcactcgcgaggcgaaggcttccactcgctatggcgagcgatgaatg 37516391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 28398208 - 28398240
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  28398208 aggcgagcgatgaagttcatcactcgcgaggcg 28398240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 45470677 - 45470613
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||| | ||| ||||||||  | | |||| ||||||||||||| |||||||||||    
T  45470677 ggcgagcgatgaagatgatcactcgcgagttgagaacagttactcgctatggcgagcgatgaatg 45470613  T

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Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 8354308 - 8354277
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  8354308 ggcgagcgatgaagttcatcactcgcgaggcg 8354277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 16091875 - 16091844
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16091875 ggcgagcgatgaagttcatcactcgcgaggcg 16091844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 17669115 - 17669084
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  17669115 ggcgagcgatgaagttcatcactcgcgaggcg 17669084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 17675767 - 17675736
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  17675767 ggcgagcgatgaagttcatcactcgcgaggcg 17675736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 18855498 - 18855529
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18855498 ggcgagcgatgaagttcatcactcgcgaggcg 18855529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 18865893 - 18865924
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18865893 ggcgagcgatgaagttcatcactcgcgaggcg 18865924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 19118077 - 19118108
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  19118077 ggcgagcgatgaagttcatcactcgcgaggcg 19118108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 22115217 - 22115186
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22115217 ggcgagcgatgaagttcatcactcgcgaggcg 22115186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 22121919 - 22121888
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22121919 ggcgagcgatgaagttcatcactcgcgaggcg 22121888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 22122930 - 22122899
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22122930 ggcgagcgatgaagttcatcactcgcgaggcg 22122899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 29123646 - 29123677
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  29123646 ggcgagcgatgaagttcatcactcgcgaggcg 29123677  T

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Target: scaffold0075 (Bit Score: 46; Significance: 5e-18; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 60630 - 60695
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||||||    
T  60630 aggcgagcgatgaagttcatcactcgcgaggcgaggacaactactcgctaaggcgagcgatgaatg 60695  T

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Target: chr5 (Bit Score: 46; Significance: 5e-18; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 25250162 - 25250097
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| || |||||||| |||||||| ||||||||||| |||||||||||    
T  25250162 aggcgagcgatgaagttcatcacttgcgaggcgaggacagctgctcgctatggcgagcgatgaatg 25250097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 25313946 - 25313881
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| || |||||||| |||||||| ||||||||||| |||||||||||    
T  25313946 aggcgagcgatgaagttcatcacttgcgaggcgaggacagctgctcgctatggcgagcgatgaatg 25313881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 10953807 - 10953872
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||| |||||| |||||||||||    ||| ||||||||||||| |||||||||||    
T  10953807 aggcgagcgatgaacttcatccctcgcgaggcgatatcagttactcgctatggcgagcgatgaatg 10953872  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 21618261 - 21618197
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||  | ||| ||||||||||| | ||||||||||||||| || |||||||||||    
T  21618261 ggcgagcgatgaatatgatcactcgcgaggcgagaacagctactcgctatagcgagcgatgaatg 21618197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 17284627 - 17284659
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  17284627 aggcgagcgatgaagttcatcactcgcgaggcg 17284659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 25573930 - 25573898
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  25573930 aggcgagcgatgaagttcatcactcgcgaggcg 25573898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 29470904 - 29470872
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  29470904 aggcgagcgatgaagttcatcactcgcgaggcg 29470872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1691981 - 1691950
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1691981 ggcgagcgatgaagttcatcactcgcgaggcg 1691950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 17706475 - 17706444
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  17706475 ggcgagcgatgaagttcatcactcgcgaggcg 17706444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 18038212 - 18038181
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18038212 ggcgagcgatgaagttcatcactcgcgaggcg 18038181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 19992444 - 19992475
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  19992444 ggcgagcgatgaagttcatcactcgcgaggcg 19992475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 21884734 - 21884703
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  21884734 ggcgagcgatgaagttcatccctcgcgaggcg 21884703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22133560 - 22133591
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22133560 ggcgagcgatgaagttcatcactcgcgaggcg 22133591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22265506 - 22265537
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22265506 ggcgagcgatgaagttcatcactcgcgaggcg 22265537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 22334362 - 22334331
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22334362 ggcgagcgatgaagttcatcactcgcgaggcg 22334331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22598139 - 22598170
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22598139 ggcgagcgatgaagttcatcactcgcgaggcg 22598170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22598189 - 22598220
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22598189 ggcgagcgatgaagttcatcactcgcgaggcg 22598220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23584749 - 23584780
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23584749 ggcgagcgatgaagttcatcactcgcgaggcg 23584780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23610511 - 23610542
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23610511 ggcgagcgatgaagttcatcactcgcgaggcg 23610542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 23841907 - 23841938
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  23841907 ggcgagcgatgaagttcatcactcgcgaggcg 23841938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 24471792 - 24471761
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  24471792 ggcgagcgatgaagttcatcactcgcgaggcg 24471761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 25107345 - 25107376
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  25107345 ggcgagcgatgaagttcatcactcgcgaggcg 25107376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 25166438 - 25166469
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  25166438 ggcgagcgatgaagttcatcactcgcgaggcg 25166469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 25406987 - 25407018
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  25406987 ggcgagcgatgaagttcatcactcgcgaggcg 25407018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27517311 - 27517342
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27517311 ggcgagcgatgaagttcatcactcgcgaggcg 27517342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27523948 - 27523979
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27523948 ggcgagcgatgaagttcatcactcgcgaggcg 27523979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27609246 - 27609277
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27609246 ggcgagcgatgaagttcatcactcgcgaggcg 27609277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27615906 - 27615937
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27615906 ggcgagcgatgaagttcatcactcgcgaggcg 27615937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 27686873 - 27686842
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27686873 ggcgagcgatgaagttcatcactcgcgaggcg 27686842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 40707681 - 40707712
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  40707681 ggcgagcgatgaagttcatcactcgcgaggcg 40707712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 40714323 - 40714354
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  40714323 ggcgagcgatgaagttcatcactcgcgaggcg 40714354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 41097767 - 41097736
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  41097767 ggcgagcgatgaagttcatcactcgcgaggcg 41097736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 41293980 - 41293949
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  41293980 ggcgagcgatgaagttcatcactcgcgaggcg 41293949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 41776377 - 41776408
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  41776377 ggcgagcgatgaagttcatcactcgcgaggcg 41776408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-17; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-17
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 4071533 - 4071600
Alignment:
Q  2 ctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||| |||||||| | ||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  4071533 ctaggcgaacgatgaagatgatcactcgcgaggcgaggacagctactcgctatggcgagcgatgaatg 4071600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 10659186 - 10659121
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||| ||| |||||||| ||||||||||| ||  |||||||||||||||| |||||||||||    
T  10659186 aggcgagcaatgcagttcatccctcgcgaggcgagggtagctactcgctatggcgagcgatgaatg 10659121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 36704908 - 36704841
Alignment:
Q  2 ctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||||| ||||||||||| |  |  || |||||| |||| |||||||||||    
T  36704908 ctaggcgagcgatgaagttcatccctcgcgaggcgagatcgtctgctcgctgtggcgagcgatgaatg 36704841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 48807640 - 48807597
Alignment:
Q  26 ctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  48807640 ctcgcgaggcgaggacagttactcgctatggcgagcgatgaatg 48807597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 11768421 - 11768389
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  11768421 aggcgagcgatgaagttcatcactcgcgaggcg 11768389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 20702536 - 20702504
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  20702536 aggcgagcgatgaagttcatcactcgcgaggcg 20702504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 32768235 - 32768267
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  32768235 aggcgagcgatgaagttcatcactcgcgaggcg 32768267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22242 - 22273
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22242 ggcgagcgatgaagttcatcactcgcgaggcg 22273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 60221 - 60190
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  60221 ggcgagcgatgaagttcatcactcgcgaggcg 60190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 70310 - 70279
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  70310 ggcgagcgatgaagttcatcactcgcgaggcg 70279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 74418 - 74387
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  74418 ggcgagcgatgaagttcatcactcgcgaggcg 74387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1245566 - 1245535
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1245566 ggcgagcgatgaagttcatcactcgcgaggcg 1245535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 7536746 - 7536777
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  7536746 ggcgagcgatgaagttcatcactcgcgaggcg 7536777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 8201620 - 8201589
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  8201620 ggcgagcgatgaagttcatcactcgcgaggcg 8201589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 9510556 - 9510525
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  9510556 ggcgagcgatgaagttcatcactcgcgaggcg 9510525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 11366761 - 11366792
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  11366761 ggcgagcgatgaagttcatcactcgcgaggcg 11366792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 12702932 - 12702901
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  12702932 ggcgagcgatgaagttcatcactcgcgaggcg 12702901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 13685023 - 13685054
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  13685023 ggcgagcgatgaagttcatcactcgcgaggcg 13685054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 14654913 - 14654882
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  14654913 ggcgagcgatgaagttcatcactcgcgaggcg 14654882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 15022690 - 15022721
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  15022690 ggcgagcgatgaagttcatcactcgcgaggcg 15022721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 16406839 - 16406808
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  16406839 ggcgagcgatgaagttcatcactcgcgaggcg 16406808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 18176691 - 18176722
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18176691 ggcgagcgatgaagttcatcactcgcgaggcg 18176722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 18183363 - 18183394
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18183363 ggcgagcgatgaagttcatcactcgcgaggcg 18183394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 40522906 - 40522875
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  40522906 ggcgagcgatgaagttcatcactcgcgaggcg 40522875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 44786020 - 44785989
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  44786020 ggcgagcgatgaagttcatcactcgcgaggcg 44785989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 44792661 - 44792630
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  44792661 ggcgagcgatgaagttcatcactcgcgaggcg 44792630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 41; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 4659 - 4723
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||||| ||||||||||| |  ||| ||||||||||||| |||||||||||    
T  4659 ggcgagcgatgaagttcatccctcgcgaggcgagatcagttactcgctatggcgagcgatgaatg 4723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 41; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5663 - 5731
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||||||||| ||||||||||| |  ||| ||||||||||||| |||||| ||||    
T  5663 gctaggcgagcgatgaagttcatccctcgcgaggcgagatcagttactcgctatggcgagcgattaatg 5731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 4102 - 4167
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||| |||||| ||||||||||| |  ||||||||||||||||| || ||||||||    
T  4102 aggcgagcgatgaatttcatccctcgcgaggcgagatcagctactcgctatggcgagtgatgaatg 4167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 19667 - 19732
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| || || |||||||  ||||||||||||| ||| |||||||||||    
T  19667 aggcgagcgatgaagttcatcactagcaaggcgggatcagctactcgctacggcgagcgatgaatg 19732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 126638 - 126573
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| |  || |||||||||| ||| |||||||||||    
T  126638 aggcgagcgatgaagttcatcactcgcgaggcgagatcaactactcgctaaggcgagcgatgaatg 126573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 24550502 - 24550437
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| |  || || ||||||||||| |||||||||||    
T  24550502 aggcgagcgatgaagttcatcactcgcgaggcgagatcatctgctcgctatggcgagcgatgaatg 24550437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 31732240 - 31732175
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||| | ||||| ||||||||||| |  ||||||||||||||||| |||||||||||    
T  31732240 aggcgagcgatgaggatcatcactcgcgaggcgagagcagctactcgctatggcgagcgatgaatg 31732175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 33443707 - 33443739
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  33443707 aggcgagcgatgaagttcatcactcgcgaggcg 33443739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1538451 - 1538420
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1538451 ggcgagcgatgaagttcatcactcgcgaggcg 1538420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1544540 - 1544509
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1544540 ggcgagcgatgaagttcatcactcgcgaggcg 1544509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 2869634 - 2869603
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  2869634 ggcgagcgatgaagttcatcactcgcgaggcg 2869603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 4232995 - 4232964
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  4232995 ggcgagcgatgaagttcatcactcgcgaggcg 4232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 6981220 - 6981251
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  6981220 ggcgagcgatgaagttcatcactcgcgaggcg 6981251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 8229448 - 8229479
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  8229448 ggcgagcgatgaagttcatcactcgcgaggcg 8229479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 18194079 - 18194048
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18194079 ggcgagcgatgaagttcatcactcgcgaggcg 18194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 18931637 - 18931668
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18931637 ggcgagcgatgaagttcatcactcgcgaggcg 18931668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 20061211 - 20061242
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  20061211 ggcgagcgatgaagttcatcactcgcgaggcg 20061242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20137308 - 20137343
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||| |||||| |||||||||||    
T  20137308 gctaggcgagcgatgaacttcatccctcgcgaggcg 20137343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 20649336 - 20649305
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  20649336 ggcgagcgatgaagttcatcactcgcgaggcg 20649305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 20802317 - 20802348
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  20802317 ggcgagcgatgaagttcatcactcgcgaggcg 20802348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22195561 - 22195526
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||| |||||| |||||||||||    
T  22195561 gctaggcgagcgatgaacttcatccctcgcgaggcg 22195526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22376136 - 22376101
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||| |||||| |||||||||||    
T  22376136 gctaggcgagcgatgaacttcatcactcgcgaggcg 22376101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 22863507 - 22863538
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  22863507 ggcgagcgatgaagttcatcactcgcgaggcg 22863538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 25135216 - 25135185
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  25135216 ggcgagcgatgaagttcatcactcgcgaggcg 25135185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 25928781 - 25928812
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  25928781 ggcgagcgatgaagttcatcactcgcgaggcg 25928812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 26131078 - 26131109
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  26131078 ggcgagcgatgaagttcatcactcgcgaggcg 26131109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 29593366 - 29593335
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  29593366 ggcgagcgatgaagttcatcactcgcgaggcg 29593335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 30597827 - 30597858
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  30597827 ggcgagcgatgaagttcatcactcgcgaggcg 30597858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 30637676 - 30637645
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  30637676 ggcgagcgatgaagttcatcactcgcgaggcg 30637645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.00000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 42697501 - 42697566
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| ||||||||||| |  ||| ||||||||| ||  |||||||||||    
T  42697501 aggcgagcgatgaagttcatcactcgcgaggcgagatcagttactcgctaaggggagcgatgaatg 42697566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 45755238 - 45755303
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||| ||||||||||||||| ||||| ||||| |  |||||||||| |||||| |||||||||||    
T  45755238 aggcgggcgatgaagttcatcactcgctaggcgagatcagctactcgttatggcgagcgatgaatg 45755303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 18599650 - 18599619
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  18599650 ggcgagcgatgaagttcatcactcgcgaggcg 18599619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 20215473 - 20215442
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  20215473 ggcgagcgatgaagttcatcactcgcgaggcg 20215442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 21829276 - 21829307
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  21829276 ggcgagcgatgaagttcatccctcgcgaggcg 21829307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 21844789 - 21844820
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  21844789 ggcgagcgatgaagttcatcactcgcgaggcg 21844820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 41478072 - 41478041
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  41478072 ggcgagcgatgaagttcatccctcgcgaggcg 41478041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 44844427 - 44844396
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  44844427 ggcgagcgatgaagttcatcactcgcgaggcg 44844396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 46156866 - 46156835
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  46156866 ggcgagcgatgaagttcatcactcgcgaggcg 46156835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 51328223 - 51328192
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  51328223 ggcgagcgatgaagttcatcactcgcgaggcg 51328192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 51334858 - 51334827
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  51334858 ggcgagcgatgaagttcatcactcgcgaggcg 51334827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 1394 - 1334
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatg 65  Q
    |||||||||||||| | ||| ||||||||||| | |||| ||||||||||||| |||||||    
T  1394 ggcgagcgatgaagatgatcactcgcgaggcgagaacagttactcgctatggcgagcgatg 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 10845803 - 10845768
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcgggga 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  10845803 ggcgagcgatgaagttcatcactcgcgaggcgggga 10845768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 16050694 - 16050743
Alignment:
Q  20 tcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||| ||||||||||| |  ||||||||||||||||| |||||||||||    
T  16050694 tcatcactcgcgaggcgagagcagctactcgctatggcgagcgatgaatg 16050743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 12512031 - 12511999
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  12512031 aggcgagcgatgaagttcatcactcgcgaggcg 12511999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 15726475 - 15726443
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  15726475 aggcgagcgatgaagttcatcactcgcgaggcg 15726443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 16336737 - 16336769
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  16336737 aggcgagcgatgaagttcatcactcgcgaggcg 16336769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 23052613 - 23052581
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  23052613 aggcgagcgatgaagttcatcactcgcgaggcg 23052581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 23704313 - 23704281
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  23704313 aggcgagcgatgaagttcatcactcgcgaggcg 23704281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 23722769 - 23722737
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  23722769 aggcgagcgatgaagttcatcactcgcgaggcg 23722737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 23741225 - 23741193
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  23741225 aggcgagcgatgaagttcatcactcgcgaggcg 23741193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 41201342 - 41201310
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  41201342 aggcgagcgatgaagttcatccctcgcgaggcg 41201310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 418582 - 418613
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  418582 ggcgagcgatgaagttcatcactcgcgaggcg 418613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 839807 - 839838
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  839807 ggcgagcgatgaagttcatccctcgcgaggcg 839838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1332606 - 1332575
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1332606 ggcgagcgatgaagttcatcactcgcgaggcg 1332575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 5106428 - 5106397
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  5106428 ggcgagcgatgaagttcatcactcgcgaggcg 5106397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 5149464 - 5149433
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  5149464 ggcgagcgatgaagttcatcactcgcgaggcg 5149433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 5222014 - 5222045
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  5222014 ggcgagcgatgaagttcatcactcgcgaggcg 5222045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 11300056 - 11300025
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  11300056 ggcgagcgatgaagttcatcactcgcgaggcg 11300025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 13185631 - 13185674
Alignment:
Q  26 ctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||| | |||||||||||||||||| || ||||||||    
T  13185631 ctcgcgaggcgagaacagctactcgctatggcgagtgatgaatg 13185674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 13251280 - 13251311
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  13251280 ggcgagcgatgaagttcatcactcgcgaggcg 13251311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 13257926 - 13257957
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  13257926 ggcgagcgatgaagttcatcactcgcgaggcg 13257957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 16369992 - 16370023
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||| ||||||||||||||||||    
T  16369992 ggcgagcgatgaacttcatctctcgcgaggcg 16370023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 19809592 - 19809623
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  19809592 ggcgagcgatgaagttcatcactcgcgaggcg 19809623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 26890017 - 26890048
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  26890017 ggcgagcgatgaagttcatcactcgcgaggcg 26890048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 28350664 - 28350633
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  28350664 ggcgagcgatgaagttcatcactcgcgaggcg 28350633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 30066557 - 30066588
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  30066557 ggcgagcgatgaagttcatccctcgcgaggcg 30066588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 37615953 - 37615984
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  37615953 ggcgagcgatgaagttcatcactcgcgaggcg 37615984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 41091891 - 41091860
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  41091891 ggcgagcgatgaagttcatcactcgcgaggcg 41091860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.000000005; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 162554 - 162492
Alignment:
Q  6 gcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaat 68  Q
    ||||||||||||||||||| ||||||||||| |||  ||| ||||| | ||| ||||||||||    
T  162554 gcgagcgatgaagttcatccctcgcgaggcgaggattgctgctcgcgagggcgagcgatgaat 162492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 447133 - 447165
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  447133 aggcgagcgatgaagttcatcactcgcgaggcg 447165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 30827 - 30892
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||| ||||| ||||||| ||| | ||||||||||||  |||| ||| |||||||    
T  30827 aggcgagcgatgaagatcatcactcgcgaagcgagaacagctactcgccgtggcgagcaatgaatg 30892  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 66837 - 66898
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatga 66  Q
    |||||||||||||| | ||| ||||||||||| |  ||| ||||||||||||| ||||||||    
T  66837 ggcgagcgatgaagatgatcactcgcgaggcgagagcagttactcgctatggcgagcgatga 66898  T

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Target: scaffold0042 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 29107 - 29172
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    ||||||||||||||||||||| |||| ||| || |  |||||| |||||| ||| |||||||||||    
T  29107 aggcgagcgatgaagttcatcactcgtgagacgagatcagctattcgctaaggcgagcgatgaatg 29172  T

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Target: scaffold0761 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0761
Description:

Target: scaffold0761; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 5843 - 5811
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  5843 aggcgagcgatgaagttcatccctcgcgaggcg 5811  T

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Target: scaffold0750 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 4258 - 4290
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  4258 aggcgagcgatgaagttcatccctcgcgaggcg 4290  T

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Target: scaffold0708 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0708
Description:

Target: scaffold0708; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 1913 - 1881
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  1913 aggcgagcgatgaagttcatccctcgcgaggcg 1881  T

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Target: scaffold0676 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 5011 - 5043
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  5011 aggcgagcgatgaagttcatccctcgcgaggcg 5043  T

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Target: scaffold0065 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52882 - 52814
Alignment:
Q  1 gctaggcgagcgatgaagttcatctctcgcgaggcggggacagctactcgctatggcaagcgatgaatg 69  Q
    |||||||||||||||||| ||||| |||||||||||  | | ||| || ||| |||| |||||||||||    
T  52882 gctaggcgagcgatgaagatcatccctcgcgaggcgatgtctgctgcttgctgtggcgagcgatgaatg 52814  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 307658 - 307690
Alignment:
Q  4 aggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  307658 aggcgagcgatgaagttcatcactcgcgaggcg 307690  T

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Target: scaffold1257 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold1257
Description:

Target: scaffold1257; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1833 - 1802
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1833 ggcgagcgatgaagttcatcactcgcgaggcg 1802  T

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Target: scaffold0839 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 1612 - 1581
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  1612 ggcgagcgatgaagttcatcactcgcgaggcg 1581  T

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Target: scaffold0454 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 5927 - 5958
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  5927 ggcgagcgatgaagttcatccctcgcgaggcg 5958  T

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Target: scaffold0372 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 4655 - 4624
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  4655 ggcgagcgatgaagttcatcactcgcgaggcg 4624  T

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Target: scaffold0259 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 10738 - 10769
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  10738 ggcgagcgatgaagttcatcactcgcgaggcg 10769  T

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Target: scaffold0215 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27407 - 27438
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27407 ggcgagcgatgaagttcatcactcgcgaggcg 27438  T

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Target: scaffold0210 (Bit Score: 28; Significance: 0.0000003; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 21340 - 21309
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  21340 ggcgagcgatgaagttcatccctcgcgaggcg 21309  T

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Target: scaffold0210; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 29232 - 29201
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  29232 ggcgagcgatgaagttcatccctcgcgaggcg 29201  T

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Target: scaffold0155 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 9361 - 9330
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  9361 ggcgagcgatgaagttcatcactcgcgaggcg 9330  T

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Target: scaffold0109 (Bit Score: 28; Significance: 0.0000003; HSPs: 2)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 27205 - 27236
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  27205 ggcgagcgatgaagttcatcactcgcgaggcg 27236  T

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Target: scaffold0109; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 38362 - 38331
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  38362 ggcgagcgatgaagttcatcgctcgcgaggcg 38331  T

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Target: scaffold0061 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 59005 - 58974
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  59005 ggcgagcgatgaagttcatcactcgcgaggcg 58974  T

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Target: scaffold0055 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 61366 - 61397
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  61366 ggcgagcgatgaagttcatcactcgcgaggcg 61397  T

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Target: scaffold0052 (Bit Score: 28; Significance: 0.0000003; HSPs: 3)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 549 - 518
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  549 ggcgagcgatgaagttcatcactcgcgaggcg 518  T

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Target: scaffold0052; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 10919 - 10950
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  10919 ggcgagcgatgaagttcatcactcgcgaggcg 10950  T

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Target: scaffold0052; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 57341 - 57372
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  57341 ggcgagcgatgaagttcatcactcgcgaggcg 57372  T

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Target: scaffold0044 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 31088 - 31119
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  31088 ggcgagcgatgaagttcatcactcgcgaggcg 31119  T

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Target: scaffold0036 (Bit Score: 28; Significance: 0.0000003; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 65960 - 65929
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||| ||||||||||||||||||    
T  65960 ggcgagcgatgaacttcatctctcgcgaggcg 65929  T

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Target: scaffold0036; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 71101 - 71070
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    ||||||||||||| ||||||||||||||||||    
T  71101 ggcgagcgatgaacttcatctctcgcgaggcg 71070  T

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Target: scaffold0035 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 66070 - 66039
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  66070 ggcgagcgatgaagttcatcactcgcgaggcg 66039  T

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Target: scaffold0029 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 125656 - 125625
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  125656 ggcgagcgatgaagttcatcactcgcgaggcg 125625  T

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Target: scaffold0028 (Bit Score: 28; Significance: 0.0000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 42146 - 42177
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  42146 ggcgagcgatgaagttcatcactcgcgaggcg 42177  T

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Target: scaffold0028; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 68069 - 68100
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  68069 ggcgagcgatgaagttcatcactcgcgaggcg 68100  T

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Target: scaffold0017 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 139628 - 139659
Alignment:
Q  5 ggcgagcgatgaagttcatctctcgcgaggcg 36  Q
    |||||||||||||||||||| |||||||||||    
T  139628 ggcgagcgatgaagttcatcactcgcgaggcg 139659  T

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